Gm15896 Pseudogene Detail

Summary

• Symbol
  Gm15896
• Name
  predicted gene 15896

• Feature Type
  pseudogene
• IDs
  MGI:3801743
  NCBI Gene: 100503314
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:82084701-82085451 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 44.88 cM

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801743	pseudogene	Chr9:82084701-82085451 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014187	pseudogene	Chr9:82850170-82850920 (+)
A/J	MGP_AJ_G0014205	pseudogene	Chr9:79936140-79936890 (+)
AKR/J	MGP_AKRJ_G0014130	pseudogene	Chr9:81814781-81815532 (+)
BALB/cJ	MGP_BALBcJ_G0014155	pseudogene	Chr9:79591569-79592319 (+)
C3H/HeJ	MGP_C3HHeJ_G0013986	pseudogene	Chr9:82375044-82375794 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014599	pseudogene	Chr9:85100704-85101454 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013643	pseudogene	Chr9:82753668-82754419 (+)
CBA/J	MGP_CBAJ_G0013968	pseudogene	Chr9:88121377-88122128 (+)
DBA/2J	MGP_DBA2J_G0014052	pseudogene	Chr9:79557762-79558512 (+)
FVB/NJ	MGP_FVBNJ_G0014051	pseudogene	Chr9:78708607-78709357 (+)
LP/J	MGP_LPJ_G0014135	pseudogene	Chr9:83031936-83032686 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014082	pseudogene	Chr9:89487787-89488538 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014572	pseudogene	Chr9:82038580-82039330 (+)
PWK/PhJ	MGP_PWKPhJ_G0013458	pseudogene	Chr9:79731747-79732498 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013243	pseudogene	Chr9:82202509-82203260 (+)
WSB/EiJ	MGP_WSBEiJ_G0013701	pseudogene	Chr9:81998916-81999666 (+)

Homology

• Gene Tree
  Gm15896
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15896
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000081273 (Evidence)
• NCBI Gene
  100503314

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081273	Ensembl Gene Model | MGI Sequence Detail	751	C57BL/6J
transcript	ENSMUST00000118045	Ensembl | MGI Sequence Detail	440	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;