Gm16189 Gene Detail

Summary

• Symbol
  Gm16189
• Name
  predicted gene 16189

• Feature Type
  lncRNA gene
• IDs
  MGI:3801760
  NCBI Gene: 102634295
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:70483320-70513457 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 36.85 cM

Strain
Comparison

• SNPs within 2kb
  772 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801760	lncRNA gene	ChrX:70483320-70513457 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004731	antisense lncRNA gene	ChrX:67089482-67119842 (+)
A/J	MGP_AJ_G0004709	antisense lncRNA gene	ChrX:67321913-67355980 (+)
AKR/J	MGP_AKRJ_G0004692	antisense lncRNA gene	ChrX:69123455-69158799 (+)
BALB/cJ	MGP_BALBcJ_G0004693	antisense lncRNA gene	ChrX:66407365-66438040 (+)
C3H/HeJ	MGP_C3HHeJ_G0004641	antisense lncRNA gene	ChrX:67607909-67638448 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004842	antisense lncRNA gene	ChrX:69129893-69160439 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004283	antisense lncRNA gene	ChrX:66580883-66622058 (+)
CAST/EiJ	MGP_CASTEiJ_G0004598	antisense lncRNA gene	ChrX:52996544-53030540 (+)
CBA/J	MGP_CBAJ_G0004636	antisense lncRNA gene	ChrX:71057634-71088032 (+)
DBA/2J	MGP_DBA2J_G0004651	antisense lncRNA gene	ChrX:66830480-66860503 (+)
FVB/NJ	MGP_FVBNJ_G0004669	antisense lncRNA gene	ChrX:66197754-66228238 (+)
LP/J	MGP_LPJ_G0004733	antisense lncRNA gene	ChrX:67931489-67963314 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004655	antisense lncRNA gene	ChrX:73583974-73615312 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004842	antisense lncRNA gene	ChrX:66950604-66983560 (+)
PWK/PhJ	MGP_PWKPhJ_G0004550	antisense lncRNA gene	ChrX:51037822-51068094 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004486	antisense lncRNA gene	ChrX:53895010-53932100 (+)
WSB/EiJ	MGP_WSBEiJ_G0004641	antisense lncRNA gene	ChrX:66281989-66311625 (+)

Homology

• Gene Tree
  Gm16189
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000085284 (Evidence)
• NCBI Gene
  102634295

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085284	Ensembl Gene Model | MGI Sequence Detail	30138	C57BL/6J
transcript	ENSMUST00000123707	Ensembl | MGI Sequence Detail	997	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;