Gm16011 Pseudogene Detail

Summary

• Symbol
  Gm16011
• Name
  predicted gene 16011

• Feature Type
  pseudogene
• IDs
  MGI:3801796
  NCBI Gene: 100416872
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:45247208-45249869 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 29.53 cM

Strain
Comparison

• SNPs within 2kb
  239 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801796	pseudogene	Chr16:45247046-45249869 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011287	pseudogene	Chr16:44225347-44228320 (-)
A/J	MGP_AJ_G0011272	pseudogene	Chr16:42245969-42248940 (-)
AKR/J	MGP_AKRJ_G0011235	pseudogene	Chr16:43628526-43631497 (-)
BALB/cJ	MGP_BALBcJ_G0011243	pseudogene	Chr16:42266654-42269625 (-)
C3H/HeJ	MGP_C3HHeJ_G0011139	pseudogene	Chr16:43794356-43796957 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011532	pseudogene	Chr16:45215195-45219263 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010975	pseudogene	Chr3:90723393-90735063 (+)
CAST/EiJ	MGP_CASTEiJ_G0010963	pseudogene	Chr16:43975766-43978759 (-)
CBA/J	MGP_CBAJ_G0011117	pseudogene	Chr16:47134550-47140546 (-)
DBA/2J	MGP_DBA2J_G0011165	pseudogene	Chr16:41982351-41985322 (-)
FVB/NJ	MGP_FVBNJ_G0011167	pseudogene	Chr16:41895322-41898293 (-)
LP/J	MGP_LPJ_G0011259	pseudogene	Chr16:43953581-43956552 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011159	pseudogene	Chr16:46555085-46558066 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011516	pseudogene	Chr16:43647970-43650940 (-)
PWK/PhJ	MGP_PWKPhJ_G0010834	pseudogene	Chr16:42351901-42354768 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010661	pseudogene	Chr16:43578539-43581511 (-)
WSB/EiJ	MGP_WSBEiJ_G0011005	pseudogene	Chr16:43733669-43736640 (-)

Homology

• Gene Tree
  Gm16011
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081303 (Evidence)
• NCBI Gene
  100416872

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081303	Ensembl Gene Model | MGI Sequence Detail	2662	C57BL/6J
transcript	ENSMUST00000121567	Ensembl | MGI Sequence Detail	2662	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;