Gm16175 Gene Detail

Summary

• Symbol
  Gm16175
• Name
  predicted gene 16175

• Feature Type
  lncRNA gene
• IDs
  MGI:3801805
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:19543534-19545797 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 9.95 cM

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801805	lncRNA gene	Chr7:19543534-19545797 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004415	antisense lncRNA gene	Chr7:17860672-17862936 (+)
A/J	MGP_AJ_G0004392	antisense lncRNA gene	Chr7:17460227-17462490 (+)
AKR/J	MGP_AKRJ_G0004374	antisense lncRNA gene	Chr7:17954732-17956995 (+)
BALB/cJ	MGP_BALBcJ_G0004378	antisense lncRNA gene	Chr7:17668511-17670774 (+)
C3H/HeJ	MGP_C3HHeJ_G0004327	antisense lncRNA gene	Chr7:18220019-18222283 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004527	antisense lncRNA gene	Chr7:18745125-18747388 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003985	antisense lncRNA gene	Chr7:19106905-19109330 (+)
CAST/EiJ	MGP_CASTEiJ_G0004287	antisense lncRNA gene	Chr7:14676031-14678292 (+)
CBA/J	MGP_CBAJ_G0004321	antisense lncRNA gene	Chr7:19429187-19431451 (+)
DBA/2J	MGP_DBA2J_G0004336	antisense lncRNA gene	Chr7:17414325-17416588 (+)
FVB/NJ	MGP_FVBNJ_G0004354	antisense lncRNA gene	Chr7:17297215-17299478 (+)
LP/J	MGP_LPJ_G0004416	antisense lncRNA gene	Chr7:18171981-18174245 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004345	antisense lncRNA gene	Chr7:19246595-19248859 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004526	antisense lncRNA gene	Chr7:17566527-17568790 (+)
PWK/PhJ	MGP_PWKPhJ_G0004240	antisense lncRNA gene	Chr7:14518594-14520857 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004181	antisense lncRNA gene	Chr7:12275864-12278116 (+)
WSB/EiJ	MGP_WSBEiJ_G0004326	antisense lncRNA gene	Chr7:17784684-17786947 (+)

Homology

• Gene Tree
  Gm16175
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087206 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087206	Ensembl Gene Model | MGI Sequence Detail	2264	C57BL/6J
transcript	ENSMUST00000128181	Ensembl | MGI Sequence Detail	248	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16175:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64902	Chr7:19543503-19543512 (+)	-26 bp