Gm15939 Gene Detail

Summary

• Symbol
  Gm15939
• Name
  predicted gene 15939

• Feature Type
  lncRNA gene
• IDs
  MGI:3801831
  NCBI Gene: 102632938
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:33500242-33538428 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 18.68 cM

Strain
Comparison

• SNPs within 2kb
  935 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801831	lncRNA gene	Chr10:33500242-33538428 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002846	antisense lncRNA gene	Chr10:31937978-31965045 (+)
A/J	MGP_AJ_G0002823	antisense lncRNA gene	Chr10:30959568-30997814 (+)
AKR/J	MGP_AKRJ_G0002803	antisense lncRNA gene	Chr10:31455233-31491696 (+)
BALB/cJ	MGP_BALBcJ_G0002810	antisense lncRNA gene	Chr10:31043155-31075448 (+)
C3H/HeJ	MGP_C3HHeJ_G0002767	antisense lncRNA gene	Chr10:31754001-31788312 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002952	antisense lncRNA gene	Chr10:32862447-32891994 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002497	antisense lncRNA gene	Chr10:29418238-29444302 (+)
CAST/EiJ	MGP_CASTEiJ_G0002739	antisense lncRNA gene	Chr10:31846335-31882357 (+)
CBA/J	MGP_CBAJ_G0002762	antisense lncRNA gene	Chr10:34455389-34493648 (+)
DBA/2J	MGP_DBA2J_G0002769	antisense lncRNA gene	Chr10:30677128-30714848 (+)
FVB/NJ	MGP_FVBNJ_G0002789	antisense lncRNA gene	Chr10:30214150-30240595 (+)
LP/J	MGP_LPJ_G0002845	antisense lncRNA gene	Chr10:31932956-31967699 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002779	antisense lncRNA gene	Chr10:34906092-34942044 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002956	antisense lncRNA gene	Chr10:31418920-31451787 (+)
PWK/PhJ	MGP_PWKPhJ_G0002697	antisense lncRNA gene	Chr10:30440035-30472487 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002647	antisense lncRNA gene	Chr10:31311513-31336475 (+)
WSB/EiJ	MGP_WSBEiJ_G0002768	antisense lncRNA gene	Chr10:31638630-31669293 (+)

Homology

• Gene Tree
  Gm15939
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15939
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090087 (Evidence)
• NCBI Gene
  102632938

Representative Sequences			Length	Strain/Species
genomic	102632938	NCBI Gene Model | MGI Sequence Detail	38187	C57BL/6J
transcript	NR_152723	RefSeq | MGI Sequence Detail	2147	ZRU/MplStud

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87