Gm16005 Pseudogene Detail

Summary

• Symbol
  Gm16005
• Name
  predicted gene 16005

• Feature Type
  pseudogene
• IDs
  MGI:3801854
  NCBI Gene: 102636339
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:27741547-27741818 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 14.36 cM

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801854	pseudogene	Chr17:27741543-27741818 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011336	pseudogene	Chr17:26822393-26822661 (+)
A/J	MGP_AJ_G0011321	pseudogene	Chr17:25978993-25979261 (+)
AKR/J	MGP_AKRJ_G0011285	pseudogene	Chr17:26137825-26138093 (+)
BALB/cJ	MGP_BALBcJ_G0011296	pseudogene	Chr17:26243839-26244107 (+)
C3H/HeJ	MGP_C3HHeJ_G0011186	pseudogene	Chr17:26512948-26513216 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011588	pseudogene	Chr17:27932902-27933170 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010162	pseudogene	Chr17:23369896-23370162 (+)
CAST/EiJ	MGP_CASTEiJ_G0011008	pseudogene	Chr17:26459647-26459921 (+)
CBA/J	MGP_CBAJ_G0011167	pseudogene	Chr17:28899284-28899552 (+)
DBA/2J	MGP_DBA2J_G0011219	pseudogene	Chr17:25534292-25534560 (+)
FVB/NJ	MGP_FVBNJ_G0011219	pseudogene	Chr17:25324611-25324879 (+)
LP/J	MGP_LPJ_G0011303	pseudogene	Chr17:27086472-27086740 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011215	pseudogene	Chr17:28397953-28398221 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011566	pseudogene	Chr17:26536731-26536999 (+)
PWK/PhJ	MGP_PWKPhJ_G0010881	pseudogene	Chr17:24328841-24329115 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010705	pseudogene	Chr17:24543907-24544136 (+)
WSB/EiJ	MGP_WSBEiJ_G0011049	pseudogene	Chr17:26533846-26534114 (+)

Homology

• Gene Tree
  Gm16005
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm16005
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082177 (Evidence)
• NCBI Gene
  102636339

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082177	Ensembl Gene Model | MGI Sequence Detail	272	C57BL/6J
transcript	ENSMUST00000120515	Ensembl | MGI Sequence Detail	272	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044