Gm15841 Gene Detail

Summary

• Symbol
  Gm15841
• Name
  predicted gene 15841

• Feature Type
  lncRNA gene
• IDs
  MGI:3801860
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:74941530-74946812 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 38.54 cM

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801860	lncRNA gene	Chr1:74941530-74946812 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002702	antisense lncRNA gene	Chr1:75515744-75520994 (+)
A/J	MGP_AJ_G0002678	antisense lncRNA gene	Chr1:72886183-72891474 (+)
AKR/J	MGP_AKRJ_G0002658	antisense lncRNA gene	Chr1:74901377-74906648 (+)
BALB/cJ	MGP_BALBcJ_G0002664	antisense lncRNA gene	Chr1:72946624-72951902 (+)
C3H/HeJ	MGP_C3HHeJ_G0002624	antisense lncRNA gene	Chr1:75245477-75250773 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002808	antisense lncRNA gene	Chr1:78460109-78465367 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002355	antisense lncRNA gene	Chr1:68448335-68453777 (+)
CAST/EiJ	MGP_CASTEiJ_G0002596	antisense lncRNA gene	Chr1:74570811-74576074 (+)
CBA/J	MGP_CBAJ_G0002619	antisense lncRNA gene	Chr1:81017232-81022499 (+)
DBA/2J	MGP_DBA2J_G0002624	antisense lncRNA gene	Chr1:72202993-72208284 (+)
FVB/NJ	MGP_FVBNJ_G0002644	antisense lncRNA gene	Chr1:71401567-71406836 (+)
LP/J	MGP_LPJ_G0002704	antisense lncRNA gene	Chr1:76637711-76642985 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002634	antisense lncRNA gene	Chr1:84392496-84397766 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002813	antisense lncRNA gene	Chr1:74974973-74980242 (+)
PWK/PhJ	MGP_PWKPhJ_G0002554	antisense lncRNA gene	Chr1:71667166-71672508 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002508	antisense lncRNA gene	Chr1:74340919-74346149 (+)
WSB/EiJ	MGP_WSBEiJ_G0002626	antisense lncRNA gene	Chr1:74793833-74799103 (+)

Homology

• Gene Tree
  Gm15841
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm15841
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089653 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089653	Ensembl Gene Model | MGI Sequence Detail	5283	C57BL/6J
transcript	ENSMUST00000160540	Ensembl | MGI Sequence Detail	517	Not Applicable

References

• Summaries
  All 13

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:41878 Zoltewicz JS, et al., oto is a homeotic locus with a role in anteroposterior development that is partially redundant with Lim1. Development. 1999 Nov;126(22):5085-95