Gm16020 Pseudogene Detail

Summary

• Symbol
  Gm16020
• Name
  predicted gene 16020
• Synonyms
  Gm16417

• Feature Type
  pseudogene
• IDs
  MGI:3801865
  NCBI Gene: 100039820
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:134492094-134492303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 74.61 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801865	pseudogene	Chr5:134492071-134492395 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013272	pseudogene	Chr5:138871650-138871859 (+)
A/J	MGP_AJ_G0013253	pseudogene	Chr5:132974856-132975065 (+)
AKR/J	MGP_AKRJ_G0013219	pseudogene	Chr5:137287404-137287613 (+)
BALB/cJ	MGP_BALBcJ_G0013233	pseudogene	Chr5:134308144-134308353 (+)
C3H/HeJ	MGP_C3HHeJ_G0013082	pseudogene	Chr5:137824183-137824392 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013600	pseudogene	Chr5:144092868-144093077 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012805	pseudogene	Chr5:137264821-137265030 (+)
CBA/J	MGP_CBAJ_G0013050	pseudogene	Chr5:149711542-149711751 (+)
DBA/2J	MGP_DBA2J_G0013133	pseudogene	Chr5:132873346-132873555 (+)
FVB/NJ	MGP_FVBNJ_G0013132	pseudogene	Chr5:132002697-132002906 (+)
LP/J	MGP_LPJ_G0013203	pseudogene	Chr5:139348942-139349151 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013150	pseudogene	Chr5:152794722-152794931 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013602	pseudogene	Chr5:137007658-137007867 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012843	pseudogene	Chr5:137762942-137763151 (+)

Homology

• Gene Tree
  Gm16020
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  1 involving Gm16020
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000072576 (Evidence)
• NCBI Gene
  100039820

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072576	Ensembl Gene Model | MGI Sequence Detail	210	C57BL/6J
transcript	ENSMUST00000084281	Ensembl | MGI Sequence Detail	210	Not Applicable

Other
Accession IDs

MGI:3643370

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 7
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:334324 Davenport CM, et al., Innate frequency-discrimination hyperacuity in Williams-Beuren syndrome mice. Cell. 2022 Oct 13;185(21):3877-3895.e21