Uckl1os Gene Detail

Summary

• Symbol
  Uckl1os
• Name
  uridine-cytidine kinase 1-like 1, opposite strand
• Synonyms
  Gm16119

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3801877
  NCBI Gene: 100271841
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr2:181220273-181226908 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 103.67 cM

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801877	antisense lncRNA gene	Chr2:181220273-181226963 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0003698	antisense lncRNA gene	Chr2:180429733-180436428 (+)
AKR/J	MGP_AKRJ_G0003676	antisense lncRNA gene	Chr2:185844048-185850783 (+)
BALB/cJ	MGP_BALBcJ_G0003687	antisense lncRNA gene	Chr2:180909630-180916911 (+)
C3H/HeJ	MGP_C3HHeJ_G0003634	antisense lncRNA gene	Chr2:186192745-186199439 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003826	antisense lncRNA gene	Chr2:193634923-193641610 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003331	antisense lncRNA gene	Chr2:171113531-171120231 (+)
CAST/EiJ	MGP_CASTEiJ_G0003597	antisense lncRNA gene	Chr2:184463217-184471344 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0003638	antisense lncRNA gene	Chr2:179532109-179538808 (+)
FVB/NJ	MGP_FVBNJ_G0003660	antisense lncRNA gene	Chr2:178148162-178154858 (+)
LP/J	MGP_LPJ_G0003717	antisense lncRNA gene	Chr2:188206234-188218237 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003648	antisense lncRNA gene	Chr2:203197044-203203866 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003827	antisense lncRNA gene	Chr2:185810668-185819085 (+)
PWK/PhJ	MGP_PWKPhJ_G0003552	antisense lncRNA gene	Chr2:177058289-177064973 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003495	antisense lncRNA gene	Chr2:182315762-182322442 (+)
WSB/EiJ	MGP_WSBEiJ_G0003632	antisense lncRNA gene	Chr2:186798506-186805193 (+)

Homology

• Gene Tree
  Uckl1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000010492 (Evidence)
• NCBI Gene
  100271841

Representative Sequences			Length	Strain/Species
genomic	100271841	NCBI Gene Model | MGI Sequence Detail	6636	C57BL/6J
transcript	NR_027290	RefSeq | MGI Sequence Detail	2031	Not Specified

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:80507 Waterston RH, et al., Initial sequencing and comparative analysis of the mouse genome. Nature. 2002 Dec 5;420(6915):520-62
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Uckl1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22325	Chr2:181220155-181220167 (+)	-112 bp
Tssr22326	Chr2:181221108-181221132 (+)	847 bp
Tssr22327	Chr2:181221149-181221160 (+)	882 bp
Tssr22328	Chr2:181221301-181221318 (+)	1,037 bp
Tssr22329	Chr2:181221330-181221346 (+)	1,065 bp
Tssr22330	Chr2:181221355-181221360 (+)	1,085 bp