Gm16122 Gene Detail

Summary

• Symbol
  Gm16122
• Name
  predicted gene 16122

• Feature Type
  lncRNA gene
• IDs
  MGI:3801886
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:140059860-140071267 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 78.84 cM

Strain
Comparison

• SNPs within 2kb
  392 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801886	lncRNA gene	Chr5:140059860-140071267 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004210	antisense lncRNA gene	Chr5:145117950-145130934 (+)
A/J	MGP_AJ_G0004188	antisense lncRNA gene	Chr5:138939902-138952364 (+)
AKR/J	MGP_AKRJ_G0004169	antisense lncRNA gene	Chr5:143284463-143295875 (+)
BALB/cJ	MGP_BALBcJ_G0004175	antisense lncRNA gene	Chr5:140189914-140201351 (+)
C3H/HeJ	MGP_C3HHeJ_G0004123	antisense lncRNA gene	Chr5:144062059-144074235 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004324	antisense lncRNA gene	Chr5:150491918-150504006 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003798	antisense lncRNA gene	Chr5:132792544-132803632 (+)
CAST/EiJ	MGP_CASTEiJ_G0004085	antisense lncRNA gene	Chr5:143480949-143492299 (+)
CBA/J	MGP_CBAJ_G0004117	antisense lncRNA gene	Chr5:156692504-156703947 (+)
DBA/2J	MGP_DBA2J_G0004133	antisense lncRNA gene	Chr5:138758167-138769653 (+)
FVB/NJ	MGP_FVBNJ_G0004149	antisense lncRNA gene	Chr5:137898444-137909842 (+)
LP/J	MGP_LPJ_G0004211	antisense lncRNA gene	Chr5:145729016-145740428 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004139	antisense lncRNA gene	Chr5:159284359-159296632 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004321	antisense lncRNA gene	Chr5:143117307-143129793 (+)
PWK/PhJ	MGP_PWKPhJ_G0004038	antisense lncRNA gene	Chr5:137776371-137787733 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003982	antisense lncRNA gene	Chr5:140804774-140817018 (+)
WSB/EiJ	MGP_WSBEiJ_G0004121	antisense lncRNA gene	Chr5:143904766-143917402 (+)

Homology

• Gene Tree
  Gm16122
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085673 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085673	Ensembl Gene Model | MGI Sequence Detail	11408	C57BL/6J
transcript	ENSMUST00000142625	Ensembl | MGI Sequence Detail	1158	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;