Gm16041 Gene Detail

Summary

• Symbol
  Gm16041
• Name
  predicted gene 16041

• Feature Type
  lncRNA gene
• IDs
  MGI:3801909
  NCBI Gene: 102631647
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:5041080-5047043 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 1.82 cM

Strain
Comparison

• SNPs within 2kb
  276 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801909	lncRNA gene	Chr1:5041080-5047476 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002639	antisense lncRNA gene	Chr1:2013878-2020734 (+)
A/J	MGP_AJ_G0002615	antisense lncRNA gene	Chr1:2086212-2091644 (+)
AKR/J	MGP_AKRJ_G0002595	antisense lncRNA gene	Chr1:2068747-2075515 (+)
BALB/cJ	MGP_BALBcJ_G0002601	antisense lncRNA gene	Chr1:2014895-2020780 (+)
C3H/HeJ	MGP_C3HHeJ_G0002561	antisense lncRNA gene	Chr1:2052157-2058264 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002745	antisense lncRNA gene	Chr1:2128488-2133577 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002293	antisense lncRNA gene	Chr1:1747934-1754819 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0002556	antisense lncRNA gene	Chr1:2266564-2271105 (+)
DBA/2J	MGP_DBA2J_G0002561	antisense lncRNA gene	Chr1:1992300-1998405 (+)
FVB/NJ	MGP_FVBNJ_G0002581	antisense lncRNA gene	Chr1:1971397-1978056 (+)
LP/J	MGP_LPJ_G0002641	antisense lncRNA gene	Chr1:2200042-2206396 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002572	antisense lncRNA gene	Chr1:2423544-2438027 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002750	antisense lncRNA gene	Chr1:2037568-2042712 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002445	antisense lncRNA gene	Chr1:2211612-2217403 (+)
WSB/EiJ	MGP_WSBEiJ_G0002564	antisense lncRNA gene	Chr1:2040140-2045153 (+)

Homology

• Gene Tree
  Gm16041
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000085623 (Evidence)
• NCBI Gene
  102631647

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085623	Ensembl Gene Model | MGI Sequence Detail	5964	C57BL/6J
transcript	ENSMUST00000144339	Ensembl | MGI Sequence Detail	3725	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;