Gm16085 Gene Detail

Summary

• Symbol
  Gm16085
• Name
  predicted gene 16085

• Feature Type
  lncRNA gene
• IDs
  MGI:3801937
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:107095940-107098835 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 57.85 cM

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801937	lncRNA gene	Chr12:107095940-107098835 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005401	lincRNA gene	Chr12:109146628-109149523 (+)
A/J	MGP_AJ_G0005384	lincRNA gene	Chr12:105039880-105042785 (+)
AKR/J	MGP_AKRJ_G0005364	lincRNA gene	Chr12:108099135-108102028 (+)
BALB/cJ	MGP_BALBcJ_G0005366	lincRNA gene	Chr12:105453810-105456715 (+)
C3H/HeJ	MGP_C3HHeJ_G0005315	lincRNA gene	Chr12:108529388-108532279 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005520	lincRNA gene	Chr12:112493342-112496221 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004905	lincRNA gene	Chr12:101598341-101601226 (+)
CAST/EiJ	MGP_CASTEiJ_G0005259	lincRNA gene	Chr12:103394641-103397505 (+)
CBA/J	MGP_CBAJ_G0005304	lincRNA gene	Chr12:116984346-116987251 (+)
DBA/2J	MGP_DBA2J_G0005321	lincRNA gene	Chr12:104547309-104550204 (+)
FVB/NJ	MGP_FVBNJ_G0005347	lincRNA gene	Chr12:103343056-103345945 (+)
LP/J	MGP_LPJ_G0005403	lincRNA gene	Chr12:109014967-109017862 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005329	lincRNA gene	Chr12:120267916-120270819 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005521	lincRNA gene	Chr12:107512652-107515553 (+)
PWK/PhJ	MGP_PWKPhJ_G0005208	lincRNA gene	Chr12:99162087-99164950 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005129	lincRNA gene	Chr12:101739318-101742157 (+)
WSB/EiJ	MGP_WSBEiJ_G0005309	lincRNA gene	Chr12:108457289-108460160 (+)

Homology

• Gene Tree
  Gm16085
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086037 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086037	Ensembl Gene Model | MGI Sequence Detail	2896	C57BL/6J
transcript	ENSMUST00000144575	Ensembl | MGI Sequence Detail	453	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16085:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114937	Chr12:107095917-107095928 (+)	-17 bp