Gm15897 Pseudogene Detail

Summary

• Symbol
  Gm15897
• Name
  predicted gene 15897

• Feature Type
  pseudogene
• IDs
  MGI:3801942
  NCBI Gene: 100417952
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:11312685-11314170 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 6.49 cM

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801942	pseudogene	Chr16:11312685-11314479 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011235	pseudogene	Chr16:8383377-8384862 (-)
A/J	MGP_AJ_G0011221	pseudogene	Chr16:7912982-7914467 (-)
AKR/J	MGP_AKRJ_G0011184	pseudogene	Chr16:8288290-8289775 (-)
BALB/cJ	MGP_BALBcJ_G0011191	pseudogene	Chr16:8053160-8054645 (-)
C3H/HeJ	MGP_C3HHeJ_G0011089	pseudogene	Chr16:8345279-8346764 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011484	pseudogene	Chr16:8545374-8546859 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010067	pseudogene	Chr16:8066441-8067901 (-)
CAST/EiJ	MGP_CASTEiJ_G0010910	pseudogene	Chr16:8375100-8376566 (-)
CBA/J	MGP_CBAJ_G0011069	pseudogene	Chr16:8913810-8915295 (-)
DBA/2J	MGP_DBA2J_G0011116	pseudogene	Chr16:7927967-7929452 (-)
FVB/NJ	MGP_FVBNJ_G0011119	pseudogene	Chr16:7913675-7915160 (-)
LP/J	MGP_LPJ_G0011210	pseudogene	Chr16:8313603-8315088 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011113	pseudogene	Chr16:8596290-8597775 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011465	pseudogene	Chr16:8223965-8225450 (-)
PWK/PhJ	MGP_PWKPhJ_G0010787	pseudogene	Chr16:8149214-8150693 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010611	pseudogene	Chr16:8271355-8272823 (-)
WSB/EiJ	MGP_WSBEiJ_G0010958	pseudogene	Chr16:8308530-8310006 (-)

Homology

• Gene Tree
  Gm15897
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082653 (Evidence)
• NCBI Gene
  100417952

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082653	Ensembl Gene Model | MGI Sequence Detail	1486	C57BL/6J
transcript	ENSMUST00000117770	Ensembl | MGI Sequence Detail	1486	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;