Gm16212 Gene Detail

Summary

• Symbol
  Gm16212
• Name
  predicted gene 16212

• Feature Type
  lncRNA gene
• IDs
  MGI:3801951
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:67861280-67862456 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 35.08 cM

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801951	lncRNA gene	Chr10:67861280-67862456 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002863	antisense lncRNA gene	Chr10:67817414-67818597 (-)
A/J	MGP_AJ_G0002840	antisense lncRNA gene	Chr10:65546412-65547044 (-)
AKR/J	MGP_AKRJ_G0002820	antisense lncRNA gene	Chr10:67330860-67332728 (-)
BALB/cJ	MGP_BALBcJ_G0002827	antisense lncRNA gene	Chr10:65750247-65751430 (-)
C3H/HeJ	MGP_C3HHeJ_G0002784	antisense lncRNA gene	Chr10:67330638-67331811 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002970	antisense lncRNA gene	Chr10:70252506-70253682 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002513	antisense lncRNA gene	Chr10:62227493-62228674 (-)
CAST/EiJ	MGP_CASTEiJ_G0002756	antisense lncRNA gene	Chr10:67391097-67392281 (-)
CBA/J	MGP_CBAJ_G0002779	antisense lncRNA gene	Chr10:72930576-72931152 (-)
DBA/2J	MGP_DBA2J_G0002786	antisense lncRNA gene	Chr10:64928836-64930007 (-)
FVB/NJ	MGP_FVBNJ_G0002806	antisense lncRNA gene	Chr10:64091293-64092468 (-)
LP/J	MGP_LPJ_G0002862	antisense lncRNA gene	Chr10:68234307-68236483 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002796	antisense lncRNA gene	Chr10:75137844-75139917 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002973	antisense lncRNA gene	Chr10:67227141-67228309 (-)
PWK/PhJ	MGP_PWKPhJ_G0002714	antisense lncRNA gene	Chr10:64730831-64732005 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002664	antisense lncRNA gene	Chr10:66610418-66611585 (-)
WSB/EiJ	MGP_WSBEiJ_G0002785	antisense lncRNA gene	Chr10:67173513-67174702 (-)

Homology

• Gene Tree
  Gm16212
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16212
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086838 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086838	Ensembl Gene Model | MGI Sequence Detail	1177	C57BL/6J
transcript	ENSMUST00000143555	Ensembl | MGI Sequence Detail	420	Not Applicable

References

• Summaries
  All 11

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16212:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97977	Chr10:67862541-67862548 (-)	-89 bp