Gm16063 Gene Detail

Summary

• Symbol
  Gm16063
• Name
  predicted gene 16063

• Feature Type
  lncRNA gene
• IDs
  MGI:3801955
  NCBI Gene: 330183
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:119764007-119772527 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 60.32 cM

Strain
Comparison

• SNPs within 2kb
  367 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801955	lncRNA gene	Chr5:119764007-119772529 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006789	lincRNA gene	Chr5:122904528-122912999 (+)
A/J	MGP_AJ_G0006783	lincRNA gene	Chr5:117845452-117853927 (+)
AKR/J	MGP_AKRJ_G0006753	lincRNA gene	Chr5:121649550-121659358 (+)
BALB/cJ	MGP_BALBcJ_G0006759	lincRNA gene	Chr5:119265337-119273808 (+)
C3H/HeJ	MGP_C3HHeJ_G0006704	lincRNA gene	Chr5:122186058-122195807 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006924	lincRNA gene	Chr5:127534765-127543438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006179	lincRNA gene	Chr5:112583709-112592210 (+)
CAST/EiJ	MGP_CASTEiJ_G0006627	lincRNA gene	Chr5:121268530-121278964 (+)
CBA/J	MGP_CBAJ_G0006686	lincRNA gene	Chr5:132494868-132503124 (+)
DBA/2J	MGP_DBA2J_G0006706	lincRNA gene	Chr5:117941145-117949624 (+)
FVB/NJ	MGP_FVBNJ_G0006730	lincRNA gene	Chr5:116848193-116856658 (+)
LP/J	MGP_LPJ_G0006790	lincRNA gene	Chr5:123390920-123399394 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006713	lincRNA gene	Chr5:136526855-136536811 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006926	lincRNA gene	Chr5:121212628-121222287 (+)
PWK/PhJ	MGP_PWKPhJ_G0006566	lincRNA gene	Chr5:116687006-116695747 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006472	lincRNA gene	Chr5:118854401-118862906 (+)
WSB/EiJ	MGP_WSBEiJ_G0006678	lincRNA gene	Chr5:121803876-121814249 (+)

Homology

• Gene Tree
  Gm16063
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  14
• Chemically induced (other)
  1
• Gene trapped
  12
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16063
• Find Mice (IMSR)
  9 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085708 (Evidence)
• NCBI Gene
  330183

Representative Sequences			Length	Strain/Species
genomic	330183	NCBI Gene Model | MGI Sequence Detail	8521	C57BL/6J
transcript	NR_046178	RefSeq | MGI Sequence Detail	1699	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 16

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16063:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48450	Chr5:119764004-119764031 (+)	11 bp