Gm16217 Gene Detail

Summary

• Symbol
  Gm16217
• Name
  predicted gene 16217

• Feature Type
  lncRNA gene
• IDs
  MGI:3801959
  NCBI Gene: 115487481
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:127432417-127433739 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 74.56 cM

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801959	lncRNA gene	Chr10:127431279-127442008 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002908	antisense lncRNA gene	Chr10:131217854-131219176 (+)
A/J	MGP_AJ_G0002885	antisense lncRNA gene	Chr10:125964370-125965682 (+)
AKR/J	MGP_AKRJ_G0002866	antisense lncRNA gene	Chr10:129682901-129684223 (+)
BALB/cJ	MGP_BALBcJ_G0002873	antisense lncRNA gene	Chr10:126368996-126370308 (+)
C3H/HeJ	MGP_C3HHeJ_G0002829	antisense lncRNA gene	Chr10:129833978-129835290 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003016	antisense lncRNA gene	Chr10:135667240-135668562 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002558	antisense lncRNA gene	Chr10:119952257-119953580 (+)
CAST/EiJ	MGP_CASTEiJ_G0002801	antisense lncRNA gene	Chr10:130495141-130496515 (+)
CBA/J	MGP_CBAJ_G0002825	antisense lncRNA gene	Chr10:141135276-141136734 (+)
DBA/2J	MGP_DBA2J_G0002832	antisense lncRNA gene	Chr10:125042252-125043579 (+)
FVB/NJ	MGP_FVBNJ_G0002851	antisense lncRNA gene	Chr10:123983189-123984501 (+)
LP/J	MGP_LPJ_G0002908	antisense lncRNA gene	Chr10:131792176-131793498 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002840	antisense lncRNA gene	Chr10:143822202-143823859 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003019	antisense lncRNA gene	Chr10:129755184-129756509 (+)
PWK/PhJ	MGP_PWKPhJ_G0002759	antisense lncRNA gene	Chr10:125247204-125248540 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002708	antisense lncRNA gene	Chr10:128783707-128785035 (+)
WSB/EiJ	MGP_WSBEiJ_G0002830	antisense lncRNA gene	Chr10:129976435-129977765 (+)

Homology

• Gene Tree
  Gm16217
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000086499 (Evidence)
• NCBI Gene
  115487481

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086499	Ensembl Gene Model | MGI Sequence Detail	1323	C57BL/6J
transcript	ENSMUST00000124182	Ensembl | MGI Sequence Detail	616	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16217:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96226	Chr10:127432079-127432117 (+)	-319 bp