Gm16091 Gene Detail

Summary

• Symbol
  Gm16091
• Name
  predicted gene 16091

• Feature Type
  lncRNA gene
• IDs
  MGI:3802007
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:72901445-72914699 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 34.83 cM

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802007	lncRNA gene	Chr8:72901445-72914699 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015716	unclassified non-coding RNA gene	Chr8:72627011-72641471 (-)
A/J	MGP_AJ_G0015694	unclassified non-coding RNA gene	Chr8:69697766-69712035 (-)
AKR/J	MGP_AKRJ_G0015657	unclassified non-coding RNA gene	Chr8:71756438-71769425 (-)
BALB/cJ	MGP_BALBcJ_G0015655	unclassified non-coding RNA gene	Chr8:69824956-69838126 (-)
C3H/HeJ	MGP_C3HHeJ_G0015477	unclassified non-coding RNA gene	Chr8:72377891-72394782 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016110	unclassified non-coding RNA gene	Chr8:75377826-75391391 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013838	unclassified non-coding RNA gene	Chr8:64212855-64225505 (-)
CAST/EiJ	MGP_CASTEiJ_G0015032	unclassified non-coding RNA gene	Chr8:71728101-71742294 (-)
CBA/J	MGP_CBAJ_G0015458	unclassified non-coding RNA gene	Chr8:78062520-78079858 (-)
DBA/2J	MGP_DBA2J_G0015554	unclassified non-coding RNA gene	Chr8:69430772-69444860 (-)
FVB/NJ	MGP_FVBNJ_G0015560	unclassified non-coding RNA gene	Chr8:68509967-68523342 (-)
LP/J	MGP_LPJ_G0015634	unclassified non-coding RNA gene	Chr8:72723151-72736243 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015582	unclassified non-coding RNA gene	Chr8:80574060-80587376 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016152	unclassified non-coding RNA gene	Chr8:71775516-71792107 (-)
PWK/PhJ	MGP_PWKPhJ_G0014813	unclassified non-coding RNA gene	Chr8:68692747-68706588 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014602	unclassified non-coding RNA gene	Chr8:70749028-70761530 (-)
WSB/EiJ	MGP_WSBEiJ_G0015136	unclassified non-coding RNA gene	Chr8:72119516-72135749 (-)

Homology

• Gene Tree
  Gm16091
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm16091
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087502 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087502	Ensembl Gene Model | MGI Sequence Detail	13255	C57BL/6J
transcript	ENSMUST00000156664	Ensembl | MGI Sequence Detail	963	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16091:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81772	Chr8:72914649-72914713 (-)	18 bp
Tssr81771	Chr8:72914389-72914396 (-)	306 bp