Gm16168 Gene Detail

Summary

• Symbol
  Gm16168
• Name
  predicted gene 16168

• Feature Type
  lncRNA gene
• IDs
  MGI:3802010
  NCBI Gene: 102639507
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr17:10712476-10788385 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 7.80 cM

Strain
Comparison

• SNPs within 2kb
  1695 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802010	lncRNA gene	Chr17:10712476-10788385 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003369	antisense lncRNA gene	Chr17:8097263-8168988 (+)
A/J	MGP_AJ_G0003345	antisense lncRNA gene	Chr17:7993538-8066075 (+)
AKR/J	MGP_AKRJ_G0003328	antisense lncRNA gene	Chr17:7735057-7812183 (+)
BALB/cJ	MGP_BALBcJ_G0003334	antisense lncRNA gene	Chr17:7781207-7854178 (+)
C3H/HeJ	MGP_C3HHeJ_G0003287	antisense lncRNA gene	Chr17:8032219-8103935 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003475	antisense lncRNA gene	Chr17:8405668-8483307 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002993	antisense lncRNA gene	Chr17:6346391-6421794 (-)
CAST/EiJ	MGP_CASTEiJ_G0003250	antisense lncRNA gene	Chr17:8053849-8128087 (+)
CBA/J	MGP_CBAJ_G0003283	antisense lncRNA gene	Chr17:8734324-8807975 (+)
DBA/2J	MGP_DBA2J_G0003289	antisense lncRNA gene	Chr17:7634532-7707815 (+)
FVB/NJ	MGP_FVBNJ_G0003307	antisense lncRNA gene	Chr17:7590714-7663355 (+)
LP/J	MGP_LPJ_G0003362	antisense lncRNA gene	Chr17:7882202-7957191 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003296	antisense lncRNA gene	Chr17:8397215-8475699 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003478	antisense lncRNA gene	Chr17:8045565-8119025 (+)
PWK/PhJ	MGP_PWKPhJ_G0003210	antisense lncRNA gene	Chr17:7327632-7400791 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003154	antisense lncRNA gene	Chr17:7395472-7468788 (+)
WSB/EiJ	MGP_WSBEiJ_G0003284	antisense lncRNA gene	Chr17:8349251-8424331 (+)

Homology

• Gene Tree
  Gm16168
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  98 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  4
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm16168
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  3

• Ensembl
  ENSMUSG00000089941 (Evidence)
• NCBI Gene
  102639507

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089941	Ensembl Gene Model | MGI Sequence Detail	75910	C57BL/6J
transcript	ENSMUST00000161091	Ensembl | MGI Sequence Detail	1359	Not Applicable

References

• Summaries
  All 104

  Phenotypes 98
• Earliest
  J:13141 SIDMAN RL, et al., MUTANT MICE (QUAKING AND JIMPY) WITH DEFICIENT MYELINATION IN THE CENTRAL NERVOUS SYSTEM. Science. 1964 Apr 17;144:309-11
• Latest
  J:312601 Ogorek M, et al., Atp7a and Atp7b regulate copper homeostasis in developing male germ cells in mice. Metallomics. 2017 Sep 20;9(9):1288-1303

TSS for Gm16168:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142575	Chr17:10715260-10715271 (+)	2,790 bp
Tssr142576	Chr17:10715300-10715325 (+)	2,837 bp
Tssr142577	Chr17:10715343-10715357 (+)	2,874 bp
Tssr142578	Chr17:10715363-10715370 (+)	2,891 bp