Gm16210 Pseudogene Detail

Summary

• Symbol
  Gm16210
• Name
  predicted gene 16210

• Feature Type
  pseudogene
• IDs
  MGI:3802077
  NCBI Gene: 115487443
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:39628255-39628864 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 21.07 cM

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802077	pseudogene	Chr10:39628207-39628912 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010509	pseudogene	Chr10:38275279-38275888 (-)
A/J	MGP_AJ_G0010503	pseudogene	Chr10:37253405-37254014 (-)
AKR/J	MGP_AKRJ_G0010466	pseudogene	Chr10:37771673-37772282 (-)
BALB/cJ	MGP_BALBcJ_G0010476	pseudogene	Chr10:37297362-37297971 (-)
C3H/HeJ	MGP_C3HHeJ_G0010404	pseudogene	Chr10:38098605-38099214 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010747	pseudogene	Chr10:39447321-39447930 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009416	pseudogene	Chr10:35236461-35237055 (-)
CAST/EiJ	MGP_CASTEiJ_G0010219	pseudogene	Chr10:38262123-38262732 (-)
CBA/J	MGP_CBAJ_G0010370	pseudogene	Chr10:41271210-41271819 (-)
DBA/2J	MGP_DBA2J_G0010403	pseudogene	Chr10:36774414-36775023 (-)
FVB/NJ	MGP_FVBNJ_G0010422	pseudogene	Chr10:36278538-36279147 (-)
LP/J	MGP_LPJ_G0010492	pseudogene	Chr10:38248729-38249338 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010389	pseudogene	Chr10:42121472-42122081 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010713	pseudogene	Chr10:37761906-37762515 (-)
PWK/PhJ	MGP_PWKPhJ_G0010123	pseudogene	Chr10:36618789-36619398 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009936	pseudogene	Chr10:37558133-37558741 (-)
WSB/EiJ	MGP_WSBEiJ_G0010290	pseudogene	Chr10:38038029-38038638 (-)

Homology

• Gene Tree
  Gm16210
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16210
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081608 (Evidence)
• NCBI Gene
  115487443

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081608	Ensembl Gene Model | MGI Sequence Detail	610	C57BL/6J
transcript	ENSMUST00000122161	Ensembl | MGI Sequence Detail	610	Not Applicable

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16210:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97343	Chr10:39628897-39628913 (-)	-41 bp