Gm16209 Pseudogene Detail

Summary

• Symbol
  Gm16209
• Name
  predicted gene 16209

• Feature Type
  pseudogene
• IDs
  MGI:3802095
  NCBI Gene: 100418381
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:107764112-107764738 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 53.54 cM

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802095	pseudogene	Chr8:107763720-107764868 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011899	pseudogene	Chr2:144987649-144988250 (+)
AKR/J	MGP_AKRJ_G0011864	pseudogene	Chr2:149225004-149225605 (+)
BALB/cJ	MGP_BALBcJ_G0011875	pseudogene	Chr2:145425263-145425864 (+)
C3H/HeJ	MGP_C3HHeJ_G0011756	pseudogene	Chr2:149680863-149681464 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0010655	pseudogene	Chr2:139073814-139074411 (+)
CAST/EiJ	MGP_CASTEiJ_G0013568	pseudogene	Chr8:108376314-108376882 (-)
CBA/J	MGP_CBAJ_G0011732	pseudogene	Chr2:161225906-161226507 (+)
DBA/2J	MGP_DBA2J_G0013973	pseudogene	Chr8:104389171-104390270 (-)
FVB/NJ	MGP_FVBNJ_G0011790	pseudogene	Chr2:142807591-142808192 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014003	pseudogene	Chr8:120237192-120237865 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010179	pseudogene	Chr1:6023302-6024171 (-)
PWK/PhJ	MGP_PWKPhJ_G0011393	pseudogene	Chr2:143957213-143957814 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011209	pseudogene	Chr2:148169510-148170111 (+)
WSB/EiJ	MGP_WSBEiJ_G0011564	pseudogene	Chr2:150137382-150137983 (+)

Homology

• Gene Tree
  Gm16209
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000083734 (Evidence)
• NCBI Gene
  100418381

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083734	Ensembl Gene Model | MGI Sequence Detail	627	C57BL/6J
transcript	ENSMUST00000118457	Ensembl | MGI Sequence Detail	627	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;