Gm16135 Gene Detail

Summary

• Symbol
  Gm16135
• Name
  predicted gene 16135

• Feature Type
  lncRNA gene
• IDs
  MGI:3802138
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:62834558-62835468 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 32.52 cM

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802138	lncRNA gene	Chr10:62834558-62835468 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002860	antisense lncRNA gene	Chr10:62489240-62490112 (+)
A/J	MGP_AJ_G0002837	antisense lncRNA gene	Chr10:60550256-60551117 (+)
AKR/J	MGP_AKRJ_G0002817	antisense lncRNA gene	Chr10:62147749-62148622 (+)
BALB/cJ	MGP_BALBcJ_G0002824	antisense lncRNA gene	Chr10:60664134-60665006 (+)
C3H/HeJ	MGP_C3HHeJ_G0002781	antisense lncRNA gene	Chr10:62064561-62066308 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002967	antisense lncRNA gene	Chr10:64727879-64738091 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002510	antisense lncRNA gene	Chr10:57491746-57492252 (+)
CAST/EiJ	MGP_CASTEiJ_G0002753	antisense lncRNA gene	Chr10:62114761-62115273 (+)
CBA/J	MGP_CBAJ_G0002776	antisense lncRNA gene	Chr10:67183298-67184178 (+)
DBA/2J	MGP_DBA2J_G0002783	antisense lncRNA gene	Chr10:59823308-59823817 (+)
FVB/NJ	MGP_FVBNJ_G0002803	antisense lncRNA gene	Chr10:59092506-59093416 (+)
LP/J	MGP_LPJ_G0002859	antisense lncRNA gene	Chr10:62857654-62858540 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002793	antisense lncRNA gene	Chr10:69351150-69352022 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002970	antisense lncRNA gene	Chr10:61986571-61987439 (+)
PWK/PhJ	MGP_PWKPhJ_G0002711	antisense lncRNA gene	Chr10:59704051-59704560 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002661	antisense lncRNA gene	Chr10:61339946-61340455 (+)
WSB/EiJ	MGP_WSBEiJ_G0002782	antisense lncRNA gene	Chr10:61942357-61942866 (+)

Homology

• Gene Tree
  Gm16135
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16135
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084985 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084985	Ensembl Gene Model | MGI Sequence Detail	911	C57BL/6J
transcript	ENSMUST00000129470	Ensembl | MGI Sequence Detail	568	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87