Gm15961 Gene Detail

Summary

• Symbol
  Gm15961
• Name
  predicted gene 15961

• Feature Type
  lncRNA gene
• IDs
  MGI:3802142
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:120636582-120637699 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 68.77 cM

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802142	lncRNA gene	Chr10:120636582-120637699 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036889	sense intronic lncRNA gene	Chr10:123999405-124000520 (-)
A/J	MGP_AJ_G0036877	sense intronic lncRNA gene	Chr10:119090051-119091165 (-)
AKR/J	MGP_AKRJ_G0036824	sense intronic lncRNA gene	Chr10:122639247-122640368 (-)
BALB/cJ	MGP_BALBcJ_G0036868	sense intronic lncRNA gene	Chr10:119476739-119477853 (-)
C3H/HeJ	MGP_C3HHeJ_G0036553	sense intronic lncRNA gene	Chr10:122840363-122841489 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037381	sense intronic lncRNA gene	Chr10:128208104-128209261 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034442	sense intronic lncRNA gene	Chr10:113425941-113427044 (-)
CAST/EiJ	MGP_CASTEiJ_G0035742	sense intronic lncRNA gene	Chr10:123185254-123186361 (-)
CBA/J	MGP_CBAJ_G0036528	sense intronic lncRNA gene	Chr10:133451001-133452130 (-)
DBA/2J	MGP_DBA2J_G0036705	sense intronic lncRNA gene	Chr10:118221654-118223063 (-)
FVB/NJ	MGP_FVBNJ_G0036656	sense intronic lncRNA gene	Chr10:117205534-117206650 (-)
LP/J	MGP_LPJ_G0036751	sense intronic lncRNA gene	Chr10:124539038-124540177 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036662	sense intronic lncRNA gene	Chr10:136021337-136022486 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037497	sense intronic lncRNA gene	Chr10:122649782-122650900 (-)
PWK/PhJ	MGP_PWKPhJ_G0035436	sense intronic lncRNA gene	Chr10:118323434-118324542 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035248	sense intronic lncRNA gene	Chr10:121555754-121556855 (-)
WSB/EiJ	MGP_WSBEiJ_G0035942	sense intronic lncRNA gene	Chr10:122900227-122901344 (-)

Homology

• Gene Tree
  Gm15961
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086444 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086444	Ensembl Gene Model | MGI Sequence Detail	1118	C57BL/6J
transcript	ENSMUST00000156090	Ensembl | MGI Sequence Detail	266	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;