Gm16201 Gene Detail

Summary

• Symbol
  Gm16201
• Name
  predicted gene 16201

• Feature Type
  lncRNA gene
• IDs
  MGI:3802153
  NCBI Gene: 102635948
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr7:139530309-139558890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 84.92 cM

Strain
Comparison

• SNPs within 2kb
  933 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802153	lncRNA gene	Chr7:139529912-139558893 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015698	unclassified non-coding RNA gene	Chr7:145025881-145054684 (+)
A/J	MGP_AJ_G0015676	unclassified non-coding RNA gene	Chr7:140906388-140939676 (+)
AKR/J	MGP_AKRJ_G0015639	unclassified non-coding RNA gene	Chr7:144739422-144774652 (+)
BALB/cJ	MGP_BALBcJ_G0015637	unclassified non-coding RNA gene	Chr7:140645835-140675924 (+)
C3H/HeJ	MGP_C3HHeJ_G0015459	unclassified non-coding RNA gene	Chr7:144539626-144569356 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016092	unclassified non-coding RNA gene	Chr7:150367693-150397663 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013821	unclassified non-coding RNA gene	Chr7:142031448-142062685 (+)
CAST/EiJ	MGP_CASTEiJ_G0015014	unclassified non-coding RNA gene	Chr7:136841301-136874075 (+)
CBA/J	MGP_CBAJ_G0015440	unclassified non-coding RNA gene	Chr7:155436707-155468183 (+)
DBA/2J	MGP_DBA2J_G0015536	unclassified non-coding RNA gene	Chr7:138860607-138889430 (+)
FVB/NJ	MGP_FVBNJ_G0015542	unclassified non-coding RNA gene	Chr7:138746833-138777875 (+)
LP/J	MGP_LPJ_G0015616	unclassified non-coding RNA gene	Chr7:146570319-146610671 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015564	unclassified non-coding RNA gene	Chr7:156101549-156131749 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016134	unclassified non-coding RNA gene	Chr7:143741317-143770747 (+)
PWK/PhJ	MGP_PWKPhJ_G0014796	unclassified non-coding RNA gene	Chr7:132055157-132084678 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014585	unclassified non-coding RNA gene	Chr7:130577593-130608605 (+)
WSB/EiJ	MGP_WSBEiJ_G0015119	unclassified non-coding RNA gene	Chr7:144637946-144671951 (+)

Homology

• Gene Tree
  Gm16201
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  11
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm16201
• Find Mice (IMSR)
  13 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000086742 (Evidence)
• NCBI Gene
  102635948

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086742	Ensembl Gene Model | MGI Sequence Detail	28582	C57BL/6J
transcript	ENSMUST00000139218	Ensembl | MGI Sequence Detail	2330	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16201:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69766	Chr7:139530300-139530337 (+)	10 bp
Tssr69767	Chr7:139530347-139530359 (+)	44 bp
Tssr69768	Chr7:139530609-139530630 (+)	311 bp
Tssr69769	Chr7:139533809-139533813 (+)	3,502 bp
Tssr69770	Chr7:139551623-139551639 (+)	21,322 bp
Tssr69771	Chr7:139552286-139552295 (+)	21,982 bp
Tssr69772	Chr7:139555649-139555678 (+)	25,355 bp
Tssr69773	Chr7:139558844-139558869 (+)	28,548 bp