Gm16083 Gene Detail

Summary

• Symbol
  Gm16083
• Name
  predicted gene 16083

• Feature Type
  lncRNA gene
• IDs
  MGI:3802163
  NCBI Gene: 102640300
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:130442785-130484796 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 56.89 cM

Strain
Comparison

• SNPs within 2kb
  1042 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802163	lncRNA gene	Chr1:130390313-130484812 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002736	antisense lncRNA gene	Chr1:133851263-133952893 (+)
A/J	MGP_AJ_G0002712	antisense lncRNA gene	Chr1:128894013-128993380 (+)
AKR/J	MGP_AKRJ_G0002693	antisense lncRNA gene	Chr1:132698512-132792983 (+)
BALB/cJ	MGP_BALBcJ_G0002699	antisense lncRNA gene	Chr1:129230363-129333270 (+)
C3H/HeJ	MGP_C3HHeJ_G0002657	antisense lncRNA gene	Chr1:132838812-132934597 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002842	antisense lncRNA gene	Chr1:138834361-138934445 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002389	antisense lncRNA gene	Chr1:122057943-122147409 (+)
CAST/EiJ	MGP_CASTEiJ_G0002630	antisense lncRNA gene	Chr1:131831389-131921478 (+)
CBA/J	MGP_CBAJ_G0002653	antisense lncRNA gene	Chr1:143585423-143713310 (+)
DBA/2J	MGP_DBA2J_G0002659	antisense lncRNA gene	Chr1:127864481-127960216 (+)
FVB/NJ	MGP_FVBNJ_G0002679	antisense lncRNA gene	Chr1:126508212-126607994 (+)
LP/J	MGP_LPJ_G0002737	antisense lncRNA gene	Chr1:135167831-135259028 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002669	antisense lncRNA gene	Chr1:149397129-149497249 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002847	antisense lncRNA gene	Chr1:132464594-132561893 (+)
PWK/PhJ	MGP_PWKPhJ_G0002587	antisense lncRNA gene	Chr1:126842707-126933766 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002538	antisense lncRNA gene	Chr1:131343617-131491237 (+)
WSB/EiJ	MGP_WSBEiJ_G0002659	antisense lncRNA gene	Chr1:132421288-132517227 (+)

Homology

• Gene Tree
  Gm16083
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm16083
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  3

• Ensembl
  ENSMUSG00000085526 (Evidence)
• NCBI Gene
  102640300

Representative Sequences			Length	Strain/Species
genomic	102640300	NCBI Gene Model | MGI Sequence Detail	42012	C57BL/6J
transcript	AK082696	GenBank | ENA | DDBJ | MGI Sequence Detail	2549	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm16083:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8559	Chr1:130478743-130478758 (+)	35,966 bp