Gm16185 Gene Detail

Summary

• Symbol
  Gm16185
• Name
  predicted gene 16185

• Feature Type
  lncRNA gene
• IDs
  MGI:3802169
  NCBI Gene: 102636045
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:96967379-96970663 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 50.85 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802169	lncRNA gene	Chr9:96967379-96970663 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004667	antisense lncRNA gene	Chr9:98334439-98337646 (+)
A/J	MGP_AJ_G0004648	antisense lncRNA gene	Chr9:94887772-94890978 (+)
AKR/J	MGP_AKRJ_G0004631	antisense lncRNA gene	Chr9:97186251-97189540 (+)
BALB/cJ	MGP_BALBcJ_G0004632	antisense lncRNA gene	Chr9:94565054-94568221 (+)
C3H/HeJ	MGP_C3HHeJ_G0004581	antisense lncRNA gene	Chr9:97598446-97601652 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004782	antisense lncRNA gene	Chr9:101139789-101142995 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004227	antisense lncRNA gene	Chr9:92705572-92708262 (+)
CAST/EiJ	MGP_CASTEiJ_G0004537	antisense lncRNA gene	Chr9:97398151-97401359 (+)
CBA/J	MGP_CBAJ_G0004575	antisense lncRNA gene	Chr9:104649574-104652819 (+)
DBA/2J	MGP_DBA2J_G0004590	antisense lncRNA gene	Chr9:94397937-94401260 (+)
FVB/NJ	MGP_FVBNJ_G0004608	antisense lncRNA gene	Chr9:93247784-93250990 (+)
LP/J	MGP_LPJ_G0004671	antisense lncRNA gene	Chr9:98583945-98587151 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004596	antisense lncRNA gene	Chr9:106624039-106628199 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004781	antisense lncRNA gene	Chr9:97430426-97433557 (+)
PWK/PhJ	MGP_PWKPhJ_G0004491	antisense lncRNA gene	Chr9:94596427-94599841 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004429	antisense lncRNA gene	Chr9:97485532-97488187 (+)
WSB/EiJ	MGP_WSBEiJ_G0004580	antisense lncRNA gene	Chr9:97297433-97300725 (+)

Homology

• Gene Tree
  Gm16185
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16185
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084911 (Evidence)
• NCBI Gene
  102636045

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084911	Ensembl Gene Model | MGI Sequence Detail	3285	C57BL/6J
transcript	ENSMUST00000125071	Ensembl | MGI Sequence Detail	3207	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;