BC048559 Gene Detail

Summary

• Symbol
  BC048559
• Name
  cDNA sequence BC048559

• Feature Type
  lncRNA gene
• IDs
  MGI:3814724
  NCBI Gene: 100196896
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:41622717-41656730 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  878 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3814724	lncRNA gene	Chr10:41622717-41659433 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002851	antisense lncRNA gene	Chr10:40410563-40417737 (+)
A/J	MGP_AJ_G0002828	antisense lncRNA gene	Chr10:39280600-39287767 (+)
AKR/J	MGP_AKRJ_G0002808	antisense lncRNA gene	Chr10:39872744-39879911 (+)
BALB/cJ	MGP_BALBcJ_G0002815	antisense lncRNA gene	Chr10:39343361-39350528 (+)
C3H/HeJ	MGP_C3HHeJ_G0002772	antisense lncRNA gene	Chr10:40197976-40205143 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002957	antisense lncRNA gene	Chr10:41640061-41647228 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002744	antisense lncRNA gene	Chr10:40408802-40415995 (+)
CBA/J	MGP_CBAJ_G0002767	antisense lncRNA gene	Chr10:43547916-43555083 (+)
DBA/2J	MGP_DBA2J_G0002774	antisense lncRNA gene	Chr10:38785395-38792562 (+)
FVB/NJ	MGP_FVBNJ_G0002794	antisense lncRNA gene	Chr10:38277914-38285081 (+)
LP/J	MGP_LPJ_G0002850	antisense lncRNA gene	Chr10:40409228-40416402 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002784	antisense lncRNA gene	Chr10:44340092-44347259 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002961	antisense lncRNA gene	Chr10:39848215-39855382 (+)
PWK/PhJ	MGP_PWKPhJ_G0002702	antisense lncRNA gene	Chr10:38666437-38673705 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002652	antisense lncRNA gene	Chr10:39663403-39670774 (+)
WSB/EiJ	MGP_WSBEiJ_G0002773	antisense lncRNA gene	Chr10:40177479-40184649 (+)

Homology

• Gene Tree
  BC048559
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  30
• Chemically induced (other)
  1
• Gene trapped
  28
• Radiation induced
  1
• Genomic Mutations
  2 involving BC048559
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000102114 (Evidence)
• NCBI Gene
  100196896

Representative Sequences			Length	Strain/Species
genomic	100196896	NCBI Gene Model | MGI Sequence Detail	34014	C57BL/6J
transcript	NR_152819	RefSeq | MGI Sequence Detail	858	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for BC048559:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93063	Chr10:41622745-41622754 (+)	33 bp