Gm9696 Pseudogene Detail

Summary

• Symbol
  Gm9696
• Name
  predicted gene 9696

• Feature Type
  pseudogene
• IDs
  MGI:3819177
  NCBI Gene: 676914
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:59866781-59879903 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 29.13 cM

Strain
Comparison

• SNPs within 2kb
  472 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819177	pseudogene	Chr3:59859730-59881015 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039819	pseudogene	Chr3:58809987-58837249 (+)
A/J	MGP_AJ_G0039819	pseudogene	Chr3:57083942-57122020 (+)
AKR/J	MGP_AKRJ_G0039746	pseudogene	Chr3:58221746-58249432 (+)
BALB/cJ	MGP_BALBcJ_G0039791	pseudogene	Chr3:56837085-56867632 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040360	pseudogene	Chr3:61033054-61051454 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036967	pseudogene	Chr3:53266712-53276880 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0039617	pseudogene	Chr3:56534949-56558882 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039653	pseudogene	Chr3:59642572-59668312 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040462	pseudogene	Chr3:58145152-58173114 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9696
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm9696
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000070465 (Evidence)
• NCBI Gene
  676914

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070465	Ensembl Gene Model | MGI Sequence Detail	13123	C57BL/6J
transcript	ENSMUST00000191541	Ensembl | MGI Sequence Detail	830	Not Applicable
polypeptide	Q3US01	UniProt | EBI | MGI Sequence Detail	216	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR029058 Alpha/Beta hydrolase fold
  IPR013094 Alpha/beta hydrolase fold-3
  IPR050300 'GDXG' lipolytic enzyme

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426