Scarna3a Gene Detail

Summary

• Symbol
  Scarna3a
• Name
  small Cajal body-specific RNA 3A
• Synonyms
  MBI-114

• Feature Type
  snoRNA gene
• IDs
  MGI:3819485
  NCBI Gene: 100217414
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:159167877-159167994 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 69.03 cM

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819485	snoRNA gene	Chr1:159167853-159167994 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Scarna3a
  

Gene Ontology
(GO)
Classifications

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00002074853 (Evidence)
• NCBI Gene
  100217414

Representative Sequences			Length	Strain/Species
genomic	100217414	NCBI Gene Model | MGI Sequence Detail	118	C57BL/6J
transcript	NR_028518	RefSeq | MGI Sequence Detail	118	Not Specified

References

• Summaries
  All 6
• Earliest
  J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53