Snora28 MGI Mouse Gene Detail - MGI:3819496 - small nucleolar RNA, H/ACA box 28

Sequence Map

Chr12:111507380-111507501 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819496	snoRNA gene	Chr12:111507375-111507501 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038683	snoRNA gene	Chr12:113934430-113934556 (+)
A/J	MGP_AJ_G0038675	snoRNA gene	Chr12:109550923-109551049 (+)
AKR/J	MGP_AKRJ_G0038610	snoRNA gene	Chr12:112689226-112689352 (+)
BALB/cJ	MGP_BALBcJ_G0038660	snoRNA gene	Chr12:109972540-109972666 (+)
C3H/HeJ	MGP_C3HHeJ_G0038322	snoRNA gene	Chr12:113191448-113191574 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039205	snoRNA gene	Chr12:117463293-117463419 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035961	snoRNA gene	Chr12:105998138-105998263 (+)
CAST/EiJ	MGP_CASTEiJ_G0037463	snoRNA gene	Chr12:108034310-108034436 (+)
CBA/J	MGP_CBAJ_G0038294	snoRNA gene	Chr12:121934207-121934333 (+)
DBA/2J	MGP_DBA2J_G0038483	snoRNA gene	Chr12:109035053-109035179 (+)
FVB/NJ	MGP_FVBNJ_G0038436	snoRNA gene	Chr12:107834728-107834854 (+)
LP/J	MGP_LPJ_G0038522	snoRNA gene	Chr12:113757446-113757572 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038434	snoRNA gene	Chr12:125067041-125067167 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039308	snoRNA gene	Chr12:112203116-112203242 (+)
PWK/PhJ	MGP_PWKPhJ_G0037149	snoRNA gene	Chr12:103676723-103676849 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036906	snoRNA gene	Chr12:106365410-106365536 (+)
WSB/EiJ	MGP_WSBEiJ_G0037696	snoRNA gene	Chr12:113121164-113121290 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	100316932	NCBI Gene Model \| MGI Sequence Detail	122	C57BL/6J	± kb
	transcript	NR_033168	RefSeq \| MGI Sequence Detail	122	Not Specified

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Summaries

All 8

Developmental Gene Expression 1
Earliest

J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
Latest

J:237822 Lee J, et al., Rpl13a small nucleolar RNAs regulate systemic glucose metabolism. J Clin Invest. 2016 Dec 01;126(12):4616-4625

TSS for Snora28:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115327	Chr12:111506647-111506661 (+)	-726 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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