Gm16262 Gene Detail

Summary

• Symbol
  Gm16262
• Name
  predicted gene 16262

• Feature Type
  lncRNA gene
• IDs
  MGI:3826533
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:94577757-94584372 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 49.26 cM

Strain
Comparison

• SNPs within 2kb
  455 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826533	lncRNA gene	Chr9:94577757-94584372 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004658	antisense lncRNA gene	Chr9:95820291-95826907 (-)
A/J	MGP_AJ_G0004639	antisense lncRNA gene	Chr9:92472039-92478651 (-)
AKR/J	MGP_AKRJ_G0004622	antisense lncRNA gene	Chr9:94677178-94683790 (-)
BALB/cJ	MGP_BALBcJ_G0004623	antisense lncRNA gene	Chr9:92155244-92161856 (-)
C3H/HeJ	MGP_C3HHeJ_G0004572	antisense lncRNA gene	Chr9:95131972-95138584 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004773	antisense lncRNA gene	Chr9:98548997-98555612 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004528	antisense lncRNA gene	Chr9:94863554-94870174 (-)
CBA/J	MGP_CBAJ_G0004566	antisense lncRNA gene	Chr9:101943125-101949737 (-)
DBA/2J	MGP_DBA2J_G0004581	antisense lncRNA gene	Chr9:91982301-91993868 (-)
FVB/NJ	MGP_FVBNJ_G0004599	antisense lncRNA gene	Chr9:90870070-90876677 (-)
LP/J	MGP_LPJ_G0004662	antisense lncRNA gene	Chr9:96045973-96052589 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004587	antisense lncRNA gene	Chr9:103986407-103993019 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004772	antisense lncRNA gene	Chr9:94917329-94923938 (-)
PWK/PhJ	MGP_PWKPhJ_G0004482	antisense lncRNA gene	Chr9:92142865-92151662 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004421	antisense lncRNA gene	Chr9:94894934-94901564 (-)
WSB/EiJ	MGP_WSBEiJ_G0004571	antisense lncRNA gene	Chr9:94789653-94796265 (-)

Homology

• Gene Tree
  Gm16262
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16262
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000089709 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089709	Ensembl Gene Model | MGI Sequence Detail	6616	C57BL/6J
transcript	ENSMUST00000162306	Ensembl | MGI Sequence Detail	1751	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16262:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90898	Chr9:94584406-94584429 (-)	-46 bp