Gm16285 Pseudogene Detail

Summary

• Symbol
  Gm16285
• Name
  predicted gene 16285

• Feature Type
  pseudogene
• IDs
  MGI:3826537
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:101612445-101612791 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 51.26 cM

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826537	pseudogene	Chr12:101612445-101612791 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010938	pseudogene	Chr12:103235887-103236229 (+)
A/J	MGP_AJ_G0010945	pseudogene	Chr12:99275137-99275483 (+)
AKR/J	MGP_AKRJ_G0010900	pseudogene	Chr12:102101232-102101574 (+)
BALB/cJ	MGP_BALBcJ_G0010918	pseudogene	Chr12:99628650-99628992 (+)
C3H/HeJ	MGP_C3HHeJ_G0010816	pseudogene	Chr12:102537362-102537708 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011190	pseudogene	Chr12:106471033-106471379 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010647	pseudogene	Chr12:97375418-97375762 (+)
CBA/J	MGP_CBAJ_G0010789	pseudogene	Chr12:110401603-110401945 (+)
DBA/2J	MGP_DBA2J_G0010838	pseudogene	Chr12:98807033-98807375 (+)
FVB/NJ	MGP_FVBNJ_G0010851	pseudogene	Chr12:97520275-97520618 (+)
LP/J	MGP_LPJ_G0010921	pseudogene	Chr12:103101732-103102074 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011176	pseudogene	Chr12:101612863-101613204 (+)
PWK/PhJ	MGP_PWKPhJ_G0010531	pseudogene	Chr12:93353737-93354079 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010348	pseudogene	Chr12:95778597-95778939 (+)
WSB/EiJ	MGP_WSBEiJ_G0010690	pseudogene	Chr12:102488247-102488589 (+)

Homology

• Gene Tree
  Gm16285
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16285
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000090152 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090152	Ensembl Gene Model | MGI Sequence Detail	347	C57BL/6J
transcript	ENSMUST00000162999	Ensembl | MGI Sequence Detail	347	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;