Gm16268 Gene Detail

Summary

• Symbol
  Gm16268
• Name
  predicted gene 16268

• Feature Type
  lncRNA gene
• IDs
  MGI:3826557
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:86674958-86710818 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.14 cM

Strain
Comparison

• SNPs within 2kb
  952 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826557	lncRNA gene	Chr10:86674958-86710818 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002888	antisense lncRNA gene	Chr10:87819755-87856457 (+)
A/J	MGP_AJ_G0002865	antisense lncRNA gene	Chr10:84914269-84950506 (+)
AKR/J	MGP_AKRJ_G0002846	antisense lncRNA gene	Chr10:87302566-87338272 (+)
BALB/cJ	MGP_BALBcJ_G0002853	antisense lncRNA gene	Chr10:85177035-85215857 (+)
C3H/HeJ	MGP_C3HHeJ_G0002809	antisense lncRNA gene	Chr10:87298050-87333576 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002996	antisense lncRNA gene	Chr10:90794007-90831300 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002539	antisense lncRNA gene	Chr10:80716426-80752057 (+)
CAST/EiJ	MGP_CASTEiJ_G0002781	antisense lncRNA gene	Chr10:87192922-87229333 (+)
CBA/J	MGP_CBAJ_G0002805	antisense lncRNA gene	Chr10:94564031-94599581 (+)
DBA/2J	MGP_DBA2J_G0002812	antisense lncRNA gene	Chr10:84018178-84053914 (+)
FVB/NJ	MGP_FVBNJ_G0002831	antisense lncRNA gene	Chr10:83289641-83324689 (+)
LP/J	MGP_LPJ_G0002888	antisense lncRNA gene	Chr10:88515607-88553860 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002820	antisense lncRNA gene	Chr10:96130464-96165675 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002999	antisense lncRNA gene	Chr10:87146615-87182090 (+)
PWK/PhJ	MGP_PWKPhJ_G0002739	antisense lncRNA gene	Chr10:84031928-84068932 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002688	antisense lncRNA gene	Chr10:85874351-85909144 (+)
WSB/EiJ	MGP_WSBEiJ_G0002810	antisense lncRNA gene	Chr10:87112926-87149660 (+)

Homology

• Gene Tree
  Gm16268
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16268
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089959 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089959	Ensembl Gene Model | MGI Sequence Detail	35861	C57BL/6J
transcript	ENSMUST00000159445	Ensembl | MGI Sequence Detail	1157	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16268:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr95014	Chr10:86710187-86710231 (+)	35,251 bp