Gm16308 Gene Detail

Summary

• Symbol
  Gm16308
• Name
  predicted gene 16308

• Feature Type
  lncRNA gene
• IDs
  MGI:3826592
  NCBI Gene: 105245973
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:71681957-71685629 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 32.31 cM

Strain
Comparison

• SNPs within 2kb
  281 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826592	lncRNA gene	Chr15:71681957-71685629 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003290	antisense lncRNA gene	Chr15:71475927-71479599 (+)
A/J	MGP_AJ_G0003266	antisense lncRNA gene	Chr15:68908516-68912190 (+)
AKR/J	MGP_AKRJ_G0003249	antisense lncRNA gene	Chr15:70669509-70673181 (+)
BALB/cJ	MGP_BALBcJ_G0003255	antisense lncRNA gene	Chr15:68923969-68927643 (+)
C3H/HeJ	MGP_C3HHeJ_G0003208	antisense lncRNA gene	Chr15:70815014-70818688 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003397	antisense lncRNA gene	Chr15:74229382-74233054 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002920	antisense lncRNA gene	Chr15:65392311-65396409 (+)
CAST/EiJ	MGP_CASTEiJ_G0003174	antisense lncRNA gene	Chr15:71532050-71536764 (+)
CBA/J	MGP_CBAJ_G0003205	antisense lncRNA gene	Chr15:76660640-76664314 (+)
DBA/2J	MGP_DBA2J_G0003210	antisense lncRNA gene	Chr15:68525897-68529569 (+)
FVB/NJ	MGP_FVBNJ_G0003229	antisense lncRNA gene	Chr15:67541107-67544779 (+)
LP/J	MGP_LPJ_G0003283	antisense lncRNA gene	Chr15:71496370-71500042 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003218	antisense lncRNA gene	Chr15:82059352-82063024 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003399	antisense lncRNA gene	Chr15:71068526-71072198 (+)
PWK/PhJ	MGP_PWKPhJ_G0003131	antisense lncRNA gene	Chr15:68601233-68604878 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003077	antisense lncRNA gene	Chr15:70925394-70929056 (+)
WSB/EiJ	MGP_WSBEiJ_G0003208	antisense lncRNA gene	Chr15:71048450-71052122 (+)

Homology

• Gene Tree
  Gm16308
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  23 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  3
• Radiation induced
  2
• Genomic Mutations
  5 involving Gm16308
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090237 (Evidence)
• NCBI Gene
  105245973

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090237	Ensembl Gene Model | MGI Sequence Detail	3673	C57BL/6J
transcript	ENSMUST00000162171	Ensembl | MGI Sequence Detail	940	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 29

  Diseases 1

  Phenotypes 23
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27