Gm16275 Gene Detail

Summary

• Symbol
  Gm16275
• Name
  predicted gene 16275

• Feature Type
  lncRNA gene
• IDs
  MGI:3826597
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:23990815-23996737 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.05 cM

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826597	lncRNA gene	Chr17:23990815-23996737 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003374	antisense lncRNA gene	Chr17:22690542-22696689 (+)
A/J	MGP_AJ_G0003350	antisense lncRNA gene	Chr17:22034123-22040292 (+)
AKR/J	MGP_AKRJ_G0003333	antisense lncRNA gene	Chr17:22114472-22120317 (+)
BALB/cJ	MGP_BALBcJ_G0003339	antisense lncRNA gene	Chr17:22250917-22257329 (+)
C3H/HeJ	MGP_C3HHeJ_G0003292	antisense lncRNA gene	Chr17:22475155-22482257 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003480	antisense lncRNA gene	Chr17:23679279-23687074 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002997	antisense lncRNA gene	Chr17:19599897-19605914 (+)
CAST/EiJ	MGP_CASTEiJ_G0003255	antisense lncRNA gene	Chr17:22309110-22314838 (+)
CBA/J	MGP_CBAJ_G0003288	antisense lncRNA gene	Chr17:24493939-24499760 (+)
DBA/2J	MGP_DBA2J_G0003294	antisense lncRNA gene	Chr17:21664255-21670784 (+)
FVB/NJ	MGP_FVBNJ_G0003312	antisense lncRNA gene	Chr17:21390674-21396483 (+)
LP/J	MGP_LPJ_G0003367	antisense lncRNA gene	Chr17:22945352-22957498 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003301	antisense lncRNA gene	Chr17:24242800-24248665 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003483	antisense lncRNA gene	Chr17:22411914-22417921 (+)
PWK/PhJ	MGP_PWKPhJ_G0003215	antisense lncRNA gene	Chr17:20451211-20457259 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003159	antisense lncRNA gene	Chr17:20428406-20435535 (+)
WSB/EiJ	MGP_WSBEiJ_G0003289	antisense lncRNA gene	Chr17:22461451-22467321 (+)

Homology

• Gene Tree
  Gm16275
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086719 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086719	Ensembl Gene Model | MGI Sequence Detail	5923	C57BL/6J
transcript	ENSMUST00000147774	Ensembl | MGI Sequence Detail	712	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;