Gm16271 Gene Detail

Summary

• Symbol
  Gm16271
• Name
  predicted gene 16271

• Feature Type
  lncRNA gene
• IDs
  MGI:3826610
  NCBI Gene: 115487470
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:86808080-86863879 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.33 cM

Strain
Comparison

• SNPs within 2kb
  1986 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826610	lncRNA gene	Chr10:86808005-86867749 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002890	antisense lncRNA gene	Chr10:87960308-88020674 (+)
A/J	MGP_AJ_G0002867	antisense lncRNA gene	Chr10:85056986-85115049 (+)
AKR/J	MGP_AKRJ_G0002848	antisense lncRNA gene	Chr10:87436248-87497865 (+)
BALB/cJ	MGP_BALBcJ_G0002855	antisense lncRNA gene	Chr10:85314245-85372314 (+)
C3H/HeJ	MGP_C3HHeJ_G0002811	antisense lncRNA gene	Chr10:87437428-87498457 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002998	antisense lncRNA gene	Chr10:90946092-91009789 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002541	antisense lncRNA gene	Chr10:80853177-80898794 (+)
CAST/EiJ	MGP_CASTEiJ_G0002783	antisense lncRNA gene	Chr10:87335881-87397391 (+)
CBA/J	MGP_CBAJ_G0002807	antisense lncRNA gene	Chr10:94718484-94778693 (+)
DBA/2J	MGP_DBA2J_G0002814	antisense lncRNA gene	Chr10:84155847-84216969 (+)
FVB/NJ	MGP_FVBNJ_G0002833	antisense lncRNA gene	Chr10:83422316-83486598 (+)
LP/J	MGP_LPJ_G0002890	antisense lncRNA gene	Chr10:88667266-88738318 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002822	antisense lncRNA gene	Chr10:96274711-96337769 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003001	antisense lncRNA gene	Chr10:87283595-87346059 (+)
PWK/PhJ	MGP_PWKPhJ_G0002741	antisense lncRNA gene	Chr10:84173157-84234232 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002690	antisense lncRNA gene	Chr10:86007772-86067191 (+)
WSB/EiJ	MGP_WSBEiJ_G0002812	antisense lncRNA gene	Chr10:87253093-87311883 (+)

Homology

• Gene Tree
  Gm16271
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16271
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089656 (Evidence)
• NCBI Gene
  115487470

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089656	Ensembl Gene Model | MGI Sequence Detail	55800	C57BL/6J
transcript	ENSMUST00000162837	Ensembl | MGI Sequence Detail	220	Not Applicable

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87