Gm15725 Pseudogene Detail

Summary

• Symbol
  Gm15725
• Name
  predicted gene 15725
• Synonyms
  actin, beta, cytoplasmic (Actb) pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3833682
  NCBI Gene: 100047966
• Alliance
  gene page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr16:37702904-37703993 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 26.50 cM

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3833682	pseudogene	Chr16:37702835-37704626 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039675	pseudogene	Chr16:36381619-36382708 (+)
A/J	MGP_AJ_G0039673	pseudogene	Chr16:34562678-34563767 (+)
AKR/J	MGP_AKRJ_G0039599	pseudogene	Chr16:35887516-35888605 (+)
BALB/cJ	MGP_BALBcJ_G0039645	pseudogene	Chr16:34688463-34689552 (+)
C3H/HeJ	MGP_C3HHeJ_G0039307	pseudogene	Chr16:35992865-35993954 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040202	pseudogene	Chr16:37220087-37221176 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038428	pseudogene	Chr16:36140485-36141574 (+)
CBA/J	MGP_CBAJ_G0039278	pseudogene	Chr16:38843193-38844282 (+)
DBA/2J	MGP_DBA2J_G0039471	pseudogene	Chr16:34455826-34456915 (+)
FVB/NJ	MGP_FVBNJ_G0039427	pseudogene	Chr16:34487641-34488730 (+)
LP/J	MGP_LPJ_G0039512	pseudogene	Chr16:36059158-36060247 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039430	pseudogene	Chr16:37985588-37986677 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040307	pseudogene	Chr16:35838195-35839284 (+)
PWK/PhJ	MGP_PWKPhJ_G0038103	pseudogene	Chr16:34860051-34861270 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037852	pseudogene	Chr16:35753741-35758345 (+)
WSB/EiJ	MGP_WSBEiJ_G0038661	pseudogene	Chr16:35919064-35920153 (+)

Homology

• Gene Tree
  Gm15725
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000083405 (Evidence)
• NCBI Gene
  100047966

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083405	Ensembl Gene Model | MGI Sequence Detail	1090	C57BL/6J
transcript	ENSMUST00000119947	Ensembl | MGI Sequence Detail	1090	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15725:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138334	Chr16:37701663-37701688 (+)	-1,228 bp
Tssr138335	Chr16:37701707-37701723 (+)	-1,189 bp
Tssr138336	Chr16:37702866-37702895 (+)	-23 bp
Tssr138337	Chr16:37702957-37703009 (+)	79 bp
Tssr138338	Chr16:37703216-37703233 (+)	321 bp
Tssr138339	Chr16:37703373-37703376 (+)	471 bp
Tssr138340	Chr16:37703456-37703481 (+)	565 bp
Tssr138341	Chr16:37703693-37703708 (+)	797 bp
Tssr138342	Chr16:37703740-37703754 (+)	843 bp
Tssr138343	Chr16:37703812-37703854 (+)	929 bp
Tssr138344	Chr16:37703961-37703990 (+)	1,072 bp