Gm16163 Gene Detail

Summary

• Symbol
  Gm16163
• Name
  predicted gene 16163

• Feature Type
  lncRNA gene
• IDs
  MGI:3833836
  NCBI Gene: 100303730
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr8:125558437-125590442 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 72.81 cM

Strain
Comparison

• SNPs within 2kb
  759 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3833836	lncRNA gene	Chr8:125558437-125590442 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015728	unclassified non-coding RNA gene	Chr8:128543954-128573320 (+)
A/J	MGP_AJ_G0015706	unclassified non-coding RNA gene	Chr8:123211921-123237149 (+)
AKR/J	MGP_AKRJ_G0015669	unclassified non-coding RNA gene	Chr8:126773483-126799096 (+)
BALB/cJ	MGP_BALBcJ_G0015667	unclassified non-coding RNA gene	Chr8:123397648-123423240 (+)
C3H/HeJ	MGP_C3HHeJ_G0015489	unclassified non-coding RNA gene	Chr8:127420913-127447601 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016122	unclassified non-coding RNA gene	Chr8:132830782-132862255 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013848	unclassified non-coding RNA gene	Chr8:115973930-115998945 (+)
CAST/EiJ	MGP_CASTEiJ_G0015043	unclassified non-coding RNA gene	Chr8:127543800-127569265 (+)
CBA/J	MGP_CBAJ_G0015469	unclassified non-coding RNA gene	Chr8:137708867-137740524 (+)
DBA/2J	MGP_DBA2J_G0015566	unclassified non-coding RNA gene	Chr8:122372860-122403456 (+)
FVB/NJ	MGP_FVBNJ_G0015572	unclassified non-coding RNA gene	Chr8:121554122-121581811 (+)
LP/J	MGP_LPJ_G0015646	unclassified non-coding RNA gene	Chr8:128703222-128732870 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015594	unclassified non-coding RNA gene	Chr8:139792095-139817498 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016164	unclassified non-coding RNA gene	Chr8:127011334-127037685 (+)
PWK/PhJ	MGP_PWKPhJ_G0014824	unclassified non-coding RNA gene	Chr8:122134248-122160121 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014613	unclassified non-coding RNA gene	Chr8:125638781-125669115 (+)
WSB/EiJ	MGP_WSBEiJ_G0015147	unclassified non-coding RNA gene	Chr8:127729092-127754610 (+)

Homology

• Gene Tree
  Gm16163
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000090118 (Evidence)
• NCBI Gene
  100303730

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090118	Ensembl Gene Model | MGI Sequence Detail	32006	C57BL/6J
transcript	ENSMUST00000161868	Ensembl | MGI Sequence Detail	1119	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

References

• Summaries
  All 9

  Developmental Gene Expression 1

  Phenotypes 1
• Earliest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for Gm16163:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80040	Chr8:125557755-125557767 (+)	-676 bp
Tssr80041	Chr8:125557877-125557891 (+)	-553 bp
Tssr80042	Chr8:125558446-125558483 (+)	28 bp
Tssr80043	Chr8:125558494-125558510 (+)	65 bp
Tssr80044	Chr8:125558522-125558538 (+)	93 bp
Tssr80045	Chr8:125558542-125558553 (+)	111 bp