Gm15861 Pseudogene Detail

Summary

• Symbol
  Gm15861
• Name
  predicted gene 15861

• Feature Type
  pseudogene
• IDs
  MGI:3835840
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:130378520-130378858 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 63.44 cM

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3835840	pseudogene	Chr6:130378520-130378858 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013725	pseudogene	Chr6:134190438-134190778 (-)
A/J	MGP_AJ_G0013713	pseudogene	Chr6:129001302-129001640 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013693	pseudogene	Chr6:128684482-128684820 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014082	pseudogene	Chr6:137821794-137822132 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013665	pseudogene	Chr6:134425018-134425356 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014069	pseudogene	Chr6:132673710-132674048 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm15861
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9

• Ensembl
  ENSMUSG00000082777 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082777	Ensembl Gene Model | MGI Sequence Detail	339	C57BL/6J
transcript	ENSMUST00000120979	Ensembl | MGI Sequence Detail	339	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;