Mir1950 Gene Detail

Summary

• Symbol
  Mir1950
• Name
  microRNA 1950
• Synonyms
  mmu-mir-1950

• Feature Type
  miRNA gene
• IDs
  MGI:3837023
  NCBI Gene: 100316775
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:34942796-34942869 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 29.79 cM

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3837023	miRNA gene	Chr19:34942796-34942869 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0008440	miRNA gene	Chr19:33751386-33751459 (+)
A/J	MGP_AJ_G0008428	miRNA gene	Chr19:32118522-32118595 (+)
AKR/J	MGP_AKRJ_G0008413	miRNA gene	Chr19:33222231-33222304 (+)
BALB/cJ	MGP_BALBcJ_G0008415	miRNA gene	Chr19:32231287-32231360 (+)
C3H/HeJ	MGP_C3HHeJ_G0008358	miRNA gene	Chr19:33302311-33302384 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0008619	miRNA gene	Chr19:34751942-34752015 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007638	miRNA gene	Chr19:31526540-31526604 (+)
CAST/EiJ	MGP_CASTEiJ_G0008217	miRNA gene	Chr19:33059426-33059499 (+)
CBA/J	MGP_CBAJ_G0008323	miRNA gene	Chr19:36372793-36372866 (+)
DBA/2J	MGP_DBA2J_G0008358	miRNA gene	Chr19:32009460-32009533 (+)
FVB/NJ	MGP_FVBNJ_G0008380	miRNA gene	Chr19:31836155-31836228 (+)
LP/J	MGP_LPJ_G0008443	miRNA gene	Chr19:33864645-33864718 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0008343	miRNA gene	Chr19:36147428-36147501 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0008608	miRNA gene	Chr19:33297094-33297167 (+)
PWK/PhJ	MGP_PWKPhJ_G0008140	miRNA gene	Chr19:31826351-31826424 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0008015	miRNA gene	Chr19:32167993-32168066 (+)
WSB/EiJ	MGP_WSBEiJ_G0008300	miRNA gene	Chr19:33374627-33374700 (+)

Homology

• Gene Tree
  Mir1950
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Mir1950
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089151 (Evidence)
• NCBI Gene
  100316775

Representative Sequences			Length	Strain/Species
genomic	100316775	NCBI Gene Model | MGI Sequence Detail	74	C57BL/6J
transcript	NR_035473	RefSeq | MGI Sequence Detail	74	ZRU/MplStud

Other Database
Links

miRBase

MI0009941

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:93237 Nobrega MA, et al., Megabase deletions of gene deserts result in viable mice. Nature. 2004 Oct 21;431(7011):988-93
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4