Gm16345 Pseudogene Detail

Summary

• Symbol
  Gm16345
• Name
  predicted gene 16345

• Feature Type
  pseudogene
• IDs
  MGI:3840130
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:32164142-32164299 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 17.91 cM

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840130	pseudogene	Chr18:32164142-32164299 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011430	pseudogene	Chr18:30161973-30162130 (+)
A/J	MGP_AJ_G0011424	pseudogene	Chr18:29159526-29159683 (+)
AKR/J	MGP_AKRJ_G0011388	pseudogene	Chr18:29964212-29964369 (+)
BALB/cJ	MGP_BALBcJ_G0011403	pseudogene	Chr18:29252285-29252442 (+)
C3H/HeJ	MGP_C3HHeJ_G0011291	pseudogene	Chr18:30002791-30002948 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011693	pseudogene	Chr18:31234369-31234526 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010252	pseudogene	Chr18:29386575-29386739 (+)
CAST/EiJ	MGP_CASTEiJ_G0011099	pseudogene	Chr18:29904656-29904813 (+)
CBA/J	MGP_CBAJ_G0011267	pseudogene	Chr18:32189669-32189826 (+)
DBA/2J	MGP_DBA2J_G0011320	pseudogene	Chr18:28832232-28832389 (+)
FVB/NJ	MGP_FVBNJ_G0011325	pseudogene	Chr18:28536545-28536702 (+)
LP/J	MGP_LPJ_G0011390	pseudogene	Chr18:30247203-30247360 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011317	pseudogene	Chr18:33537168-33537325 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011681	pseudogene	Chr18:29830302-29830459 (+)
PWK/PhJ	MGP_PWKPhJ_G0010961	pseudogene	Chr18:28992687-28992844 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010783	pseudogene	Chr18:30066539-30066696 (+)
WSB/EiJ	MGP_WSBEiJ_G0011129	pseudogene	Chr18:29731852-29732009 (+)

Homology

• Gene Tree
  Gm16345
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085300 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085300	Ensembl Gene Model | MGI Sequence Detail	158	C57BL/6J
transcript	ENSMUST00000146065	Ensembl | MGI Sequence Detail	158	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;