Gm16342 Pseudogene Detail

Summary

• Symbol
  Gm16342
• Name
  predicted gene 16342

• Feature Type
  pseudogene
• IDs
  MGI:3840138
  NCBI Gene: 102637702
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:102623231-102643687 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 66.48 cM

Strain
Comparison

• SNPs within 2kb
  712 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840138	pseudogene	Chr11:102623231-102643687 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039861	pseudogene	Chr11:105750595-105770601 (+)
A/J	MGP_AJ_G0039867	pseudogene	Chr11:101274528-101295045 (+)
AKR/J	MGP_AKRJ_G0039791	pseudogene	Chr11:104407403-104428158 (+)
BALB/cJ	MGP_BALBcJ_G0039844	pseudogene	Chr11:101751449-101773240 (+)
C3H/HeJ	MGP_C3HHeJ_G0039490	pseudogene	Chr11:104609843-104641957 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040410	pseudogene	Chr11:109032973-109058277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037006	pseudogene	Chr11:98700016-98720353 (+)
CAST/EiJ	MGP_CASTEiJ_G0038596	pseudogene	Chr11:105615511-105643468 (+)
CBA/J	MGP_CBAJ_G0039459	pseudogene	Chr11:113530759-113564866 (+)
DBA/2J	MGP_DBA2J_G0039662	pseudogene	Chr11:100783195-100805651 (+)
FVB/NJ	MGP_FVBNJ_G0039620	pseudogene	Chr11:100324182-100343474 (+)
LP/J	MGP_LPJ_G0039700	pseudogene	Chr11:106266706-106288704 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039617	pseudogene	Chr11:113003381-113029129 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040511	pseudogene	Chr11:104780747-104802620 (+)
PWK/PhJ	MGP_PWKPhJ_G0038269	pseudogene	Chr11:101858834-101880158 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038013	pseudogene	Chr11:104525963-104554647 (+)
WSB/EiJ	MGP_WSBEiJ_G0038827	pseudogene	Chr11:104774724-104796111 (+)

Homology

• Gene Tree
  Gm16342
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086162 (Evidence)
• NCBI Gene
  102637702

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086162	Ensembl Gene Model | MGI Sequence Detail	20457	C57BL/6J
transcript	ENSMUST00000124025	Ensembl | MGI Sequence Detail	1025	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;