Gm16346 Gene Detail

Summary

• Symbol
  Gm16346
• Name
  predicted gene 16346

• Feature Type
  lncRNA gene
• IDs
  MGI:3840154
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:16276017-16282319 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 8.38 cM

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840154	lncRNA gene	Chr8:16276017-16282319 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004543	antisense lncRNA gene	Chr8:13600295-13608633 (+)
A/J	MGP_AJ_G0004523	antisense lncRNA gene	Chr8:13180454-13186757 (+)
AKR/J	MGP_AKRJ_G0004507	antisense lncRNA gene	Chr8:13516516-13522818 (+)
BALB/cJ	MGP_BALBcJ_G0004508	antisense lncRNA gene	Chr8:13253079-13259382 (+)
C3H/HeJ	MGP_C3HHeJ_G0004457	antisense lncRNA gene	Chr8:13736898-13743201 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004658	antisense lncRNA gene	Chr8:14097131-14103433 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004111	antisense lncRNA gene	Chr8:12541692-12547986 (+)
CAST/EiJ	MGP_CASTEiJ_G0004417	antisense lncRNA gene	Chr8:13542289-13548571 (+)
CBA/J	MGP_CBAJ_G0004451	antisense lncRNA gene	Chr8:14658638-14664941 (+)
DBA/2J	MGP_DBA2J_G0004467	antisense lncRNA gene	Chr8:13096903-13103206 (+)
FVB/NJ	MGP_FVBNJ_G0004483	antisense lncRNA gene	Chr8:13146786-13153089 (+)
LP/J	MGP_LPJ_G0004547	antisense lncRNA gene	Chr8:13598514-13604817 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004472	antisense lncRNA gene	Chr8:14857542-14863845 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004657	antisense lncRNA gene	Chr8:13576654-13583774 (+)
PWK/PhJ	MGP_PWKPhJ_G0004369	antisense lncRNA gene	Chr8:13139668-13146617 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004311	antisense lncRNA gene	Chr8:13479479-13485771 (+)
WSB/EiJ	MGP_WSBEiJ_G0004456	antisense lncRNA gene	Chr8:13648937-13655240 (+)

Homology

• Gene Tree
  Gm16346
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085150 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085150	Ensembl Gene Model | MGI Sequence Detail	6303	C57BL/6J
transcript	ENSMUST00000129158	Ensembl | MGI Sequence Detail	937	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;