Gm16270 Pseudogene Detail

Summary

• Symbol
  Gm16270
• Name
  predicted gene 16270

• Feature Type
  pseudogene
• IDs
  MGI:3841260
  NCBI Gene: 100416105
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:86745343-86748580 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.20 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3841260	pseudogene	Chr10:86745343-86748583 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039653	pseudogene	Chr10:87894122-87897359 (+)
A/J	MGP_AJ_G0039652	pseudogene	Chr10:84988778-84992015 (+)
AKR/J	MGP_AKRJ_G0039577	pseudogene	Chr10:87372356-87375593 (+)
BALB/cJ	MGP_BALBcJ_G0039626	pseudogene	Chr10:85251477-85254714 (+)
C3H/HeJ	MGP_C3HHeJ_G0039289	pseudogene	Chr10:87374560-87377797 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040178	pseudogene	Chr10:90877205-90880442 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036823	pseudogene	Chr10:80790476-80793713 (+)
CAST/EiJ	MGP_CASTEiJ_G0038406	pseudogene	Chr10:87267107-87270344 (+)
CBA/J	MGP_CBAJ_G0039256	pseudogene	Chr10:94652878-94656115 (+)
DBA/2J	MGP_DBA2J_G0039449	pseudogene	Chr10:84089537-84092774 (+)
FVB/NJ	MGP_FVBNJ_G0039405	pseudogene	Chr10:83358738-83361975 (+)
LP/J	MGP_LPJ_G0039491	pseudogene	Chr10:88599992-88603229 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039409	pseudogene	Chr10:96205811-96209048 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040283	pseudogene	Chr10:87220993-87224230 (+)
PWK/PhJ	MGP_PWKPhJ_G0038082	pseudogene	Chr10:84105973-84109210 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037831	pseudogene	Chr10:85945804-85949041 (+)
WSB/EiJ	MGP_WSBEiJ_G0038640	pseudogene	Chr10:87187879-87191116 (+)

Homology

• Gene Tree
  Gm16270
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16270
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089775 (Evidence)
• NCBI Gene
  100416105

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089775	Ensembl Gene Model | MGI Sequence Detail	3238	C57BL/6J
transcript	ENSMUST00000160327	Ensembl | MGI Sequence Detail	3238	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87