Vmn1r-ps29 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps29
• Name
  vomeronasal 1 receptor, pseudogene 29
• Synonyms
  Vmn1r-ps30

• Feature Type
  pseudogene
• IDs
  MGI:3852367
  NCBI Gene: 100312490
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:89974594-89981571 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 40.02 cM

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3852367	pseudogene	Chr6:89974594-89981574 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040454	pseudogene	Chr6:87977341-87987773 (+)
C3H/HeJ	MGP_C3HHeJ_G0040068	pseudogene	Chr6:93963765-93970720 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041070	pseudogene	Chr6:93907245-93914222 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039139	pseudogene	Chr6:90511759-90512544 (+)
CBA/J	MGP_CBAJ_G0040045	pseudogene	Chr6:97445228-97452179 (+)
DBA/2J	MGP_DBA2J_G0040246	pseudogene	Chr6:87198359-87205315 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041147	pseudogene	Chr6:90331097-90338074 (+)
PWK/PhJ	MGP_PWKPhJ_G0038819	pseudogene	Chr6:86105516-86106301 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038531	pseudogene	Chr6:89263505-89264329 (+)
WSB/EiJ	MGP_WSBEiJ_G0039383	pseudogene	Chr6:90760032-90983783 (+)

Homology

• Gene Tree
  Vmn1r-ps29
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Vmn1r-ps29
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000092303 (Evidence)
• NCBI Gene
  100312490

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092303	Ensembl Gene Model | MGI Sequence Detail	6978	C57BL/6J
transcript	ENSMUST00000174862	Ensembl | MGI Sequence Detail	785	Not Applicable

Other
Accession IDs

MGI:3852369

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:21726 Champion KM, et al., Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11338-42
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18