Vmn1r-ps86 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps86
• Name
  vomeronasal 1 receptor, pseudogene 86

• Feature Type
  pseudogene
• IDs
  MGI:3852450
  NCBI Gene: 100312515
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:25954505-25955051 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 14.24 cM

Strain
Comparison

• SNPs within 2kb
  66 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3852450	pseudogene	Chr7:25954505-25955051 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040551	pseudogene	Chr7:24778601-24779147 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0041178	pseudogene	Chr7:25601534-25602080 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040283	pseudogene	Chr7:24121369-24121915 (+)
LP/J	MGP_LPJ_G0040374	pseudogene	Chr7:25067882-25068428 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041246	pseudogene	Chr7:24406014-24406560 (+)
PWK/PhJ	MGP_PWKPhJ_G0038897	pseudogene	Chr7:18948113-18955478 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039467	pseudogene	Chr7:24655388-24655934 (+)

Homology

• Gene Tree
  Vmn1r-ps86
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Vmn1r-ps86
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000092514 (Evidence)
• NCBI Gene
  100312515

Representative Sequences			Length	Strain/Species
genomic	100312515	NCBI Gene Model | MGI Sequence Detail	547	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18
• Latest
  J:345867 Li L, et al., Impact of nicotine metabolism on nicotine's pharmacological effects and behavioral responses: insights from a Cyp2a(4/5)bgs-null mouse. J Pharmacol Exp Ther. 2013 Dec;347(3):746-54