Vmn1r-ps141 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps141
• Name
  vomeronasal 1 receptor, pseudogene 141

• Feature Type
  pseudogene
• IDs
  MGI:3852481
  NCBI Gene: 100312567
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:20625266-20626018 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3852481	pseudogene	Chr17:20625266-20626039 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040127	pseudogene	Chr17:19093677-19094427 (+)
A/J	MGP_AJ_G0040125	pseudogene	Chr17:18297062-18297812 (+)
AKR/J	MGP_AKRJ_G0040050	pseudogene	Chr17:18368654-18369404 (+)
BALB/cJ	MGP_BALBcJ_G0040106	pseudogene	Chr17:18489274-18490024 (+)
C3H/HeJ	MGP_C3HHeJ_G0039759	pseudogene	Chr17:18727386-18728136 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040701	pseudogene	Chr17:19639088-19639840 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037173	pseudogene	Chr17:15966814-15967566 (+)
CAST/EiJ	MGP_CASTEiJ_G0038846	pseudogene	Chr17:18375293-18376043 (+)
CBA/J	MGP_CBAJ_G0039725	pseudogene	Chr17:20407149-20407899 (+)
DBA/2J	MGP_DBA2J_G0039917	pseudogene	Chr17:17989170-17989920 (+)
FVB/NJ	MGP_FVBNJ_G0039878	pseudogene	Chr17:17752841-17753591 (+)
LP/J	MGP_LPJ_G0039967	pseudogene	Chr17:19040688-19041438 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039866	pseudogene	Chr17:20234802-20235554 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040794	pseudogene	Chr17:18697085-18697835 (+)
PWK/PhJ	MGP_PWKPhJ_G0038539	pseudogene	Chr17:16820171-16820921 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038245	pseudogene	Chr17:16894769-16895519 (+)
WSB/EiJ	MGP_WSBEiJ_G0039075	pseudogene	Chr17:18857092-18857842 (+)

Homology

• Gene Tree
  Vmn1r-ps141
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Vmn1r-ps141
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093729 (Evidence)
• NCBI Gene
  100312567

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093729	Ensembl Gene Model | MGI Sequence Detail	753	C57BL/6J
transcript	ENSMUST00000176293	Ensembl | MGI Sequence Detail	753	Not Applicable

References

• Summaries
  All 20

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964