Gm16540 Gene Detail

Summary

• Symbol
  Gm16540
• Name
  predicted gene 16540

• Feature Type
  lncRNA gene
• IDs
  MGI:4414960
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:89964566-89965687 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 39.20 cM

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414960	lncRNA gene	Chr3:89964566-89965687 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036949	sense intronic lncRNA gene	Chr3:90319814-90323201 (+)
A/J	MGP_AJ_G0036937	sense intronic lncRNA gene	Chr3:87326349-87327514 (+)
AKR/J	MGP_AKRJ_G0036884	sense intronic lncRNA gene	Chr3:89461211-89462934 (+)
BALB/cJ	MGP_BALBcJ_G0036928	sense intronic lncRNA gene	Chr3:87288124-87297087 (+)
C3H/HeJ	MGP_C3HHeJ_G0036614	sense intronic lncRNA gene	Chr3:89640043-89640969 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035803	sense intronic lncRNA gene	Chr3:90009936-90010800 (+)
CBA/J	MGP_CBAJ_G0036589	sense intronic lncRNA gene	Chr3:96956846-96958510 (+)
DBA/2J	MGP_DBA2J_G0036764	sense intronic lncRNA gene	Chr3:86699943-86702722 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0036812	sense intronic lncRNA gene	Chr3:91390671-91393095 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036722	sense intronic lncRNA gene	Chr3:103135810-103137330 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037558	sense intronic lncRNA gene	Chr3:89207243-89209787 (+)
PWK/PhJ	MGP_PWKPhJ_G0035496	sense intronic lncRNA gene	Chr3:86590610-86591727 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035308	sense intronic lncRNA gene	Chr3:88384335-88386587 (+)
WSB/EiJ	MGP_WSBEiJ_G0036003	sense intronic lncRNA gene	Chr3:89606316-89607745 (+)

Homology

• Gene Tree
  Gm16540
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16540
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000090005 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090005	Ensembl Gene Model | MGI Sequence Detail	1122	C57BL/6J
transcript	ENSMUST00000160263	Ensembl | MGI Sequence Detail	426	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;