Gm16545 Pseudogene Detail

Summary

• Symbol
  Gm16545
• Name
  predicted gene 16545

• Feature Type
  pseudogene
• IDs
  MGI:4414965
  NCBI Gene: 108168190
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:44312018-44312480 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.52 cM

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414965	pseudogene	Chr14:44311894-44312485 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040076	pseudogene	Chr14:45181933-45182396 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039707	pseudogene	Chr14:45314845-45419655 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040636	pseudogene	Chr14:38882039-38882501 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0039866	pseudogene	Chr14:36396233-36396695 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039917	pseudogene	Chr14:45635936-45636399 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040741	pseudogene	Chr14:44952218-45027306 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038209	pseudogene	Chr14:41132941-41147539 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16545
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16545
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000090259 (Evidence)
• NCBI Gene
  108168190

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090259	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000161968	Ensembl | MGI Sequence Detail	463	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;