Gm16558 Pseudogene Detail

Summary

• Symbol
  Gm16558
• Name
  predicted gene 16558

• Feature Type
  pseudogene
• IDs
  MGI:4414978
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:25524858-25525389 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 13.92 cM

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414978	pseudogene	Chr18:25524858-25525389 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011426	pseudogene	Chr18:23210024-23210555 (+)
A/J	MGP_AJ_G0011421	pseudogene	Chr18:22534749-22535280 (+)
AKR/J	MGP_AKRJ_G0011384	pseudogene	Chr18:23218132-23218663 (+)
BALB/cJ	MGP_BALBcJ_G0011399	pseudogene	Chr18:22605300-22605831 (+)
C3H/HeJ	MGP_C3HHeJ_G0011287	pseudogene	Chr18:23158414-23158945 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011689	pseudogene	Chr18:24126449-24126980 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010248	pseudogene	Chr18:22352364-22352892 (+)
CAST/EiJ	MGP_CASTEiJ_G0011095	pseudogene	Chr18:22952775-22953306 (+)
CBA/J	MGP_CBAJ_G0011263	pseudogene	Chr18:24793206-24793737 (+)
DBA/2J	MGP_DBA2J_G0011316	pseudogene	Chr18:22182047-22182578 (+)
FVB/NJ	MGP_FVBNJ_G0011321	pseudogene	Chr18:21963250-21963781 (+)
LP/J	MGP_LPJ_G0011386	pseudogene	Chr18:23337194-23337725 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011313	pseudogene	Chr18:25801236-25801767 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011678	pseudogene	Chr18:22981675-22982206 (+)
PWK/PhJ	MGP_PWKPhJ_G0010958	pseudogene	Chr18:22338481-22339012 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010780	pseudogene	Chr18:23185684-23186215 (+)
WSB/EiJ	MGP_WSBEiJ_G0011126	pseudogene	Chr18:22866069-22866600 (+)

Homology

• Gene Tree
  Gm16558
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089908 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089908	Ensembl Gene Model | MGI Sequence Detail	532	C57BL/6J
transcript	ENSMUST00000163015	Ensembl | MGI Sequence Detail	532	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;