Rps19-ps11 Pseudogene Detail

Summary

• Symbol
  Rps19-ps11
• Name
  ribosomal protein S19, pseudogene 11
• Synonyms
  Gm16562

• Feature Type
  pseudogene
• IDs
  MGI:4414982
  NCBI Gene: 100502631
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:43249484-43249916 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 22.97 cM

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414982	pseudogene	Chr10:43249441-43249953 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010513	pseudogene	Chr10:42138962-42139394 (-)
A/J	MGP_AJ_G0010507	pseudogene	Chr10:40956605-40957037 (-)
AKR/J	MGP_AKRJ_G0010470	pseudogene	Chr10:41567632-41568064 (-)
BALB/cJ	MGP_BALBcJ_G0010480	pseudogene	Chr10:41002185-41002617 (-)
C3H/HeJ	MGP_C3HHeJ_G0010408	pseudogene	Chr10:41933370-41933802 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010751	pseudogene	Chr10:43419217-43419649 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009420	pseudogene	Chr10:38787251-38787684 (-)
CAST/EiJ	MGP_CASTEiJ_G0010225	pseudogene	Chr10:42151332-42151823 (-)
CBA/J	MGP_CBAJ_G0010374	pseudogene	Chr10:45405677-45406109 (-)
DBA/2J	MGP_DBA2J_G0010407	pseudogene	Chr10:40427516-40427948 (-)
FVB/NJ	MGP_FVBNJ_G0010426	pseudogene	Chr10:39921701-39922133 (-)
LP/J	MGP_LPJ_G0010496	pseudogene	Chr10:42145623-42146055 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010393	pseudogene	Chr10:46128939-46129371 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010720	pseudogene	Chr10:41583846-41584278 (-)
PWK/PhJ	MGP_PWKPhJ_G0010127	pseudogene	Chr10:40310569-40311001 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009941	pseudogene	Chr10:41415813-41416238 (-)
WSB/EiJ	MGP_WSBEiJ_G0010294	pseudogene	Chr10:41862406-41862838 (-)

Homology

• Gene Tree
  Rps19-ps11
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rps19-ps11
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089839 (Evidence)
• NCBI Gene
  100502631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089839	Ensembl Gene Model | MGI Sequence Detail	433	C57BL/6J
transcript	ENSMUST00000160308	Ensembl | MGI Sequence Detail	433	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Rps19-ps11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97469	Chr10:43249945-43249950 (-)	-32 bp